Browsing by Author "Rani, Suriani A."

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Biofilm control strategies based on enzymic disruption of the extracellular polymeric substance matrix - a modeling study
(2005-12) Xavier, Joao B.; Picioreanu, Cristian; Rani, Suriani A.; van Loosdrecht, Mark C. M.; Stewart, Philip S.
A kinetic model is proposed to assess the feasibility of strategies for the removal of biofilms by using substances that induce detachment by affecting the cohesiveness of the matrix of extracellular polymeric substances (EPSs). The model uses a two-state description of the EPS (natural EPS and compromised EPS) to provide a unified representation of diverse mechanisms of action of detachment-promoting agents (DPAs), which include enzymes that degrade the EPS and other agents described in the literature. A biofilm-cohesiveness factor describes local increases in detachment rates resultant from losses in cohesive strength. The kinetic model was implemented in an individual-based biofilm-modeling framework, including detachment rates dependent on local cohesiveness. The efficacy of treatments with DPAs was assessed by three-dimensional model simulations. Changes in treatment efficacy were evaluated quantitatively by using a Thiele modulus, which quantifies the relationship between diffusion of the DPA through the biofilm matrix and DPA decay rate, and a Damköhler number relating the rate of EPS reaction with a DPA and the rate of EPS production by the micro-organisms in the biofilm. This study demonstrates the feasibility and limits of implementing biofilm-control strategies based on attacking the EPS.
Observations of cell cluster hollowing in Staphylococcus epidermidis biofilms
(2007-04) Stewart, Philip S.; Rani, Suriani A.; Gjersing, Erica L.; Codd, Sarah L.; Zheng, Zhilan; Pitts, Betsey
Microbial biofilm formation appears to involve complex multicellular behaviours. For example, some bacteria exhibit extensive twitching and swarming motility after association with a surface. These forms of motility appear to be coordinated and to contribute to the spatial organization of biofilm structures (O’Toole and Kolter 1998; Klausen et al. 2003). Another intriguing phenomenon is the appearance of hollow interiors in biofilm cell clusters. Such hollowing seems to occur in the later stages of biofilm development. Hollow biofilm structures have been described for Pseudomonas aeruginosa (Sauer et al. 2002; Webb et al. 2003; Hunt et al. 2004; Parsek and Fuqua 2004; Stapper et al. 2004), Pseudomonas putida (Tolker-Nielsen et al. 2000), Pseudoalteromonas tunicate (Mai-Prochnow et al. 2004) and Actinobacillus actinomycetemcomitans (Kaplan et al. 2003) biofilms. Particularly, striking are movies in which motile cells can be seen seething in the centre of a cell cluster containing many immotile cells (Tolker-Nielsen et al. 2000; Hunt et al. 2004). Here, we report the direct microscopic observation, by a suite of techniques, of hollow cell clusters in Staphylococcus epidermidis biofilms.
Spatial patterns of DNA replication, protein synthesis and oxygen concentration within bacterial biofilms reveal diverse physiological states
(2007-03) Rani, Suriani A.; Pitts, Betsey; Beyenal, Haluk; Veluchamy, Raaja R. A.; Lewandowski, Zbigniew; Davison, William M.; Buckingham-Meyer, Kelli; Stewart, Philip S.
It has long been suspected that microbial biofilms harbor cells in a variety of activity states, but there have been few direct experimental visualizations of this physiological heterogeneity. Spatial patterns of DNA replication and protein synthetic activity were imaged and quantified in staphylococcal biofilms using immunofluorescent detection of pulse-labeled DNA and also an inducible green fluorescent protein (GFP) construct. Stratified patterns of DNA synthetic and protein synthetic activity were observed in all three biofilm systems to which the techniques were applied. In a colony biofilm system, the dimensions of the zone of anabolism at the air interface ranged from 16 to 38 μm and corresponded with the depth of oxygen penetration measured with a microelectrode. A second zone of activity was observed along the nutrient interface of the biofilm. Much of the biofilm was anabolically inactive. Since dead cells constituted only 10% of the biofilm population, most of the inactive cells in the biofilm were still viable. Collectively, these results suggest that staphylococcal biofilms contain cells in at least four distinct states: growing aerobically, growing fermentatively, dead, and dormant. The variety of activity states represented in a biofilm may contribute to the special ecology and tolerance to antimicrobial agents of biofilms.