Browsing by Author "Sun, Yan"

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Change in terrestrial ecosystem water-use efficiency over the last three decades
(2015-03) Huang, Mengtian; Piao, Shilong; Sun, Yan; Ciais, Philippe; Cheng, Lei; Mao, Jiafu; Poulter, Benjamin
Defined as the ratio between gross primary productivity (GPP) and evapotranspiration (ET), ecosystem-scale water-use efficiency (EWUE) is an indicator of the adjustment of vegetation photosynthesis to water loss. The processes controlling EWUE are complex and reflect both a slow evolution of plants and plant communities as well as fast adjustments of ecosystem functioning to changes of limiting resources. In this study, we investigated EWUE trends from 1982 to 2008 using data-driven models derived from satellite observations and process-oriented carbon cycle models. Our findings suggest positive EWUE trends of 0.0056, 0.0007 and 0.0001 g C mâˆ’2 mmâˆ’1 yrâˆ’1 under the single effect of rising CO2 (â€˜CO2â€™), climate change (â€˜CLIMâ€™) and nitrogen deposition (â€˜NDEPâ€™), respectively. Global patterns of EWUE trends under different scenarios suggest that (i) EWUE-CO2 shows global increases, (ii) EWUE-CLIM increases in mainly high latitudes and decreases at middle and low latitudes, (iii) EWUE-NDEP displays slight increasing trends except in west Siberia, eastern Europe, parts of North America and central Amazonia. The data-driven MTE model, however, shows a slight decline of EWUE during the same period (âˆ’0.0005 g C mâˆ’2 mmâˆ’1 yrâˆ’1), which differs from process-model (0.0064 g C mâˆ’2 mmâˆ’1 yrâˆ’1) simulations with all drivers taken into account. We attribute this discrepancy to the fact that the nonmodeled physiological effects of elevated CO2 reducing stomatal conductance and transpiration (TR) in the MTE model. Partial correlation analysis between EWUE and climate drivers shows similar responses to climatic variables with the data-driven model and the process-oriented models across different ecosystems. Change in water-use efficiency defined from transpiration-based WUEt (GPP/TR) and inherent water-use efficiency (IWUEt, GPPÃ—VPD/TR) in response to rising CO2, climate change, and nitrogen deposition are also discussed. Our analyses will facilitate mechanistic understanding of the carbonâ€“water interactions over terrestrial ecosystems under global change.
Global patterns and climate drivers of water-use efficiency in terrestrial ecosystems deduced from satellite-based datasets and carbon cycle models
(2016-03) Sun, Yan; Piao, Shilong; Huang, Mengtian; Ciais, Philippe; Zeng, Zhenzhong; Cheng, Lei; Li, Xiran; Zhang, Xinping; Mao, Jiafu; Peng, Shushi; Poulter, Benjamin; Shi, Xiaoying; Wang, Xuhui; Wang, Ying-Ping; Zeng, Hui
Aim: To investigate how ecosystem water-use efficiency (WUE) varies spatially under different climate conditions, and how spatial variations in WUE differ from those of transpiration-based water-use efficiency (WUEt) and transpiration-based inherent water-use efficiency (IWUEt). Location: Global terrestrial ecosystems. Methods: We investigated spatial patterns of WUE using two datasets of gross primary productivity (GPP) and evapotranspiration (ET) and four biosphere model estimates of GPP and ET. Spatial relationships between WUE and climate variables were further explored through regression analyses. Results: Global WUE estimated by two satellite-based datasets is 1.9 ± 0.1 and 1.8 ± 0.6 g C m−2 mm−1 lower than the simulations from four process-based models (2.0 ± 0.3 g C m−2 mm−1) but comparable within the uncertainty of both approaches. In both satellite-based datasets and process models, precipitation is more strongly associated with spatial gradients of WUE for temperate and tropical regions, but temperature dominates north of 50° N. WUE also increases with increasing solar radiation at high latitudes. The values of WUE from datasets and process-based models are systematically higher in wet regions (with higher GPP) than in dry regions. WUEt shows a lower precipitation sensitivity than WUE, which is contrary to leaf- and plant-level observations. IWUEt, the product of WUEt and water vapour deficit, is found to be rather conservative with spatially increasing precipitation, in agreement with leaf- and plant-level measurements. Main conclusions: WUE, WUEt and IWUEt produce different spatial relationships with climate variables. In dry ecosystems, water losses from evaporation from bare soil, uncorrelated with productivity, tend to make WUE lower than in wetter regions. Yet canopy conductance is intrinsically efficient in those ecosystems and maintains a higher IWUEt. This suggests that the responses of each component flux of evapotranspiration should be analysed separately when investigating regional gradients in WUE, its temporal variability and its trends.
Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing
(2008-03) Dowd, Scot E.; Sun, Yan; Secor, Patrick R.; Rhoads, Daniel D.; Wolcott, Benjamin M.; James, Garth A.; Wolcott, Randall D.
BACKGROUND:Chronic wound pathogenic biofilms are host-pathogen environments that colonize and exist as a cohabitation of many bacterial species. These bacterial populations cooperate to promote their own survival and the chronic nature of the infection. Few studies have performed extensive surveys of the bacterial populations that occur within different types of chronic wound biofilms. The use of 3 separate 16S-based molecular amplifications followed by pyrosequencing, shotgun Sanger sequencing, and denaturing gradient gel electrophoresis were utilized to survey the major populations of bacteria that occur in the pathogenic biofilms of three types of chronic wound types: diabetic foot ulcers (D), venous leg ulcers (V), and pressure ulcers (P). RESULTS:There are specific major populations of bacteria that were evident in the biofilms of all chronic wound types, including Staphylococcus, Pseudomonas, Peptoniphilus, Enterobacter, Stenotrophomonas, Finegoldia, and Serratia spp. Each of the wound types reveals marked differences in bacterial populations, such as pressure ulcers in which 62% of the populations were identified as obligate anaerobes. There were also populations of bacteria that were identified but not recognized as wound pathogens, such as Abiotrophia para-adiacens and Rhodopseudomonas spp. Results of molecular analyses were also compared to those obtained using traditional culture-based diagnostics. Only in one wound type did culture methods correctly identify the primary bacterial population indicating the need for improved diagnostic methods.CONCLUSIONS: If clinicians can gain a better understanding of the wound's microbiota, it will give them a greater understanding of the wound's ecology and will allow them to better manage healing of the wound improving the prognosis of patients. This research highlights the necessity to begin evaluating, studying, and treating chronic wound pathogenic biofilms as multi-species entities in order to improve the outcomes of patients. This survey will also foster the pioneering and development of new molecular diagnostic tools, which can be used to identify the community