Publications by Colleges and Departments (MSU - Bozeman)
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Item Open-source pneumatic pressure pump for drop-based microfluidic flow controls(IOP Publishing, 2023-07) Sanchez, Humberto S.; Chang, Connie B.An open-source pneumatic pressure pump is engineered for driving fluid flow in a microfluidic device. It is designed to be a cost-effective and customizable alternative to commercial systems. The pneumatic pressure pump utilizes a single open-source microcontroller to control four dual-valve pressure regulators. The control scheme is written in the Arduino development environment and the user interface is written in Python. The pump was used to pressurize water and a fluorinated oil that have similar viscosities. The pump can accurately control pressures to a resolution of less than 0.02 psig with rapid response times of less than one second, overshoot of desired pressures by less than 30%, and setting response times of less than two seconds. The pump was also validated in its ability to produce water-in-oil drops using a drop-making microfluidic device. The resultant drop size scaled as expected with the pressures applied to the emulsion phases. The pump is the first custom-made dual-valve regulator that is used to precisely control fluid flow in a microfluidic device. The presented design is an advancement towards making more fully open-source pneumatic pressure pumps for controlling flow in microfluidic devices.Item Single-Cell Infection of Influenza A Virus Using Drop-Based Microfluidics(American Society for Microbiology, 2022-10) Loveday, Emma Kate; Sanchez, Humberto S.; Thomas, Mallory M.; Chang, Connie B.Drop-based microfluidics has revolutionized single-cell studies and can be applied toward analyzing tens of thousands to millions of single cells and their products contained within picoliter-sized drops. Drop-based microfluidics can shed insight into single-cell virology, enabling higher-resolution analysis of cellular and viral heterogeneity during viral infection. In this work, individual A549, MDCK, and siat7e cells were infected with influenza A virus (IAV) and encapsulated into 100-μm-size drops. Initial studies of uninfected cells encapsulated in drops demonstrated high cell viability and drop stability. Cell viability of uninfected cells in the drops remained above 75%, and the average drop radii changed by less than 3% following cell encapsulation and incubation over 24 h. Infection parameters were analyzed over 24 h from individually infected cells in drops. The number of IAV viral genomes and infectious viruses released from A549 and MDCK cells in drops was not significantly different from bulk infection as measured by reverse transcriptase quantitative PCR (RT-qPCR) and plaque assay. The application of drop-based microfluidics in this work expands the capacity to propagate IAV viruses and perform high-throughput analyses of individually infected cells.Item Metabolomic Profiling and Mechanotransduction of Single Chondrocytes Encapsulated in Alginate Microgels(MDPI AG, 2022-03) Fredrikson, Jacob P.; Brahmachary, Priyanka P.; Erdoğan, Ayten E.; Archambault, Zachary K.; Wilking, James N.; June, Ronald K.; Chang, Connie B.Articular cartilage is comprised of two main components, the extracellular matrix (ECM) and the pericellular matrix (PCM). The PCM helps to protect chondrocytes in the cartilage from mechanical loads, but in patients with osteoarthritis, the PCM is weakened, resulting in increased chondrocyte stress. As chondrocytes are responsible for matrix synthesis and maintenance, it is important to understand how mechanical loads affect the cellular responses of chondrocytes. Many studies have examined chondrocyte responses to in vitro mechanical loading by embedding chondrocytes in 3-D hydrogels. However, these experiments are mostly performed in the absence of PCM, which may obscure important responses to mechanotransduction. Here, drop-based microfluidics is used to culture single chondrocytes in alginate microgels for cell-directed PCM synthesis that closely mimics the in vivo microenvironment. Chondrocytes formed PCM over 10 days in these single-cell 3-D microenvironments. Mechanotransduction studies were performed, in which single-cell microgels mimicking the cartilage PCM were embedded in high-stiffness agarose. After physiological dynamic compression in a custom-built bioreactor, microgels exhibited distinct metabolomic profiles from both uncompressed and monolayer controls. These results demonstrate the potential of single cell encapsulation in alginate microgels to advance cartilage tissue engineering and basic chondrocyte mechanobiology.