Animal & Range Sciences

Permanent URI for this communityhttps://scholarworks.montana.edu/handle/1/9

The curricula in animal science provide students with a firm foundation in the biological and natural sciences, animal breeding, reproductive physiology, nutrition, and livestock production and management. Natural Resources & Rangeland Ecology focuses on managing the interaction of livestock, and wildlife and their rangeland habitats. Emphasis is placed on soil, water and vegetation attributes which influence habitat ecology and management of livestock and wildlife.

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Adaptive constraints at the range edge of a widespread and expanding invasive plant
(Oxford University Press, 2023-12) Fletcher, Rebecca A.; Atwater, Daniel Z.; Haak, David C.; Bagavathiannan, Muthukumar V.; DiTommaso, Antonio; Lehnhoff, Erik; Paterson, Andrew H.; Auckland, Susan; Govindasmo, Prabhu; Lemke, Cornelia; Morris, Edward; Rainville, Lisa; Barney, Jacob N.
Identifying the factors that facilitate and limit invasive species’ range expansion has both practical and theoretical importance, especially at the range edges. Here, we used reciprocal common garden experiments spanning the North/South and East/West range that include the North American core, intermediate and range edges of the globally invasive plant, Johnsongrass (Sorghum halepense) to investigate the interplay of climate, biotic interactions (i.e. competition) and patterns of adaptation. Our results suggest that the rapid range expansion of Johnsongrass into diverse environments across wide geographies occurred largely without local adaptation, but that further range expansion may be restricted by a fitness trade-off that limits population growth at the range edge. Interestingly, plant competition strongly dampened Johnsongrass growth but did not change the rank order performance of populations within a garden, though this varied among gardens (climates). Our findings highlight the importance of including the range edge when studying the range dynamics of invasive species, especially as we try to understand how invasive species will respond to accelerating global changes.
Aging influences the response of T cells to stimulation by the ellagitannin, oenothein B
(2015-06) Ramstead, Andrew G.; Schepetkin, Igor A.; Todd, Kimberly; Loeffelholz, James; Berardinelli, James G.; Quinn, Mark T.; Jutila, Mark A.
Several plant extracts, including certain polyphenols, prime innate lymphocytes and enhance responses to secondary stimuli. Oenothein B, a polyphenol isolated from Epilobium angustifolium and other plant sources, enhances IFNÎ³ production by both bovine and human NK cells and T cells, alone and in response to secondary stimulation by cytokines or tumor cells. Innate immune cell responsiveness is known to be affected by aging, but whether polyphenol responses by these cells are also impacted by aging is not known. Therefore, we examined oenothein B responsiveness in T cells from cord blood, young, and adult donors. We found that oenothein B stimulates bovine and human T cells from individuals over a broad range of ages, as measured by increased IL-2RÎ± and CD69 expression. However, clear differences in induction of cytokine production by T cells were seen. In T cells from human cord blood and bovine calves, oenothein B was unable to induce IFNÎ³ production. However, oenothein B induced IFNÎ³ production by T cells from adult humans and cattle. In addition, oenothein B induced GM-CSF production by human adult T cells, but not cord blood T cells. Within the responsive T cell population, we found that CD45RO + memory T cells expressed more cytokines in response to oenothein B than CD45RO âˆ’ T cells. In summary, our data suggest that the immunostimulation of T cells by oenothein B is influenced by age, particularly with respect to immune cytokine production.
Application of Feeding Behaviour to Predict Morbidity of Newly Received Calves in a Commercial Feedlot.
(2001-09) Quimby, W. F.; Sowell, Bok F.; Bowman, J. G. P; Branine, M. E.; Hubbert, M. E.; Sherwood, H. W.
The objective of this study was to use feeding behavior of newly received steers (average initial weight 191 kg) to detect morbidity in animals in a commercial feedlot. Two separate 32 d feeding trials were conducted in Wellton, Arizona, in July and November 1996. Radio frequency technology was used to record the total time spent within 50 cm of the feedbunk (animal presence every 5.25 s times 5.25 s) in 3 h intervals from 0600 to 2400 on a daily basis for 103 and 122 male calves in trial 1 and 2, respectively. Statistical procedures based on the cumulative sums (CUSUM) of the 3 h feeding intervals were used to detect morbid animals, compared with detection of animals deemed morbid by experienced pen riders. In trial 1, the CUSUM procedure detected animal morbidity 4.5 d earlier (P < 0.001) than the feedlot personnel. In trial 2, the CUSUM procedure detected animal morbidity 3.7 d earlier (P < 0.001) than feedlot pen riders. Overall accuracy, positive predictive value and sensitivity of the CUSUM prediction method were 87, 91, and 90%, respectively. Combined trial data suggest that feeding behavior during the first 30 d cattle are in a receiving pen, as collected with radio frequency technology and analyzed with CUSUM charts, may be used to detect animal morbidity approximately 4.1 d earlier (P < 0.001) than conventional methods typically employed in commercial feedlots.
Associations among the genome, rumen metabolome, ruminal bacteria, and milk production in early-lactation Holsteins
(Elsevier, 2023-03) Golder, H.M.; Thomson, J.; Rehberger, J.; Smith, A.H.; Block, E.; Lean, I.J.
A multicenter observational study to evaluate genome-wide association was conducted in early-lactation Holstein cows (n = 293) from 36 herds in Canada, the USA, and Australia. Phenotypic observations included rumen metabolome, acidosis risk, ruminal bacterial taxa, and milk composition and yield measures. Diets ranged from pasture supplemented with concentrates to total mixed rations (nonfiber carbohydrates = 17 to 47, and neutral detergent fiber = 27 to 58% of dry matter). Rumen samples were collected <3 h after feeding and analyzed for pH, ammonia, d- and l-lactate, volatile fatty acid (VFA) concentrations, and abundance of bacterial phyla and families. Eigenvectors were produced using cluster and discriminant analyses from a combination of pH and ammonia, d-lactate, and VFA concentrations, and were used to estimate the probability of the risk of ruminal acidosis based on proximity to the centroid of 3 clusters, termed high (24.0% of cows), medium (24.2%), and low risk (51.8%) for acidosis. DNA of sufficient quality was successfully extracted from whole blood (218 cows) or hair (65 cows) collected simultaneously with the rumen samples and sequenced using the Geneseek Genomic Profiler Bovine 150K Illumina SNPchip. Genome-wide association used an additive model and linear regression with principal component analysis (PCA) population stratification and a Bonferroni correction for multiple comparisons. Population structure was visualized using PCA plots. Single genomic markers were associated with milk protein percent and the center logged ratio abundance of the phyla Chloroflexi, SR1, and Spirochaetes, and tended to be associated with milk fat yield, rumen acetate, butyrate, and isovalerate concentrations and with the probability of being in the low-risk acidosis group. More than one genomic marker was associated or tended to be associated with rumen isobutyrate and caproate concentrations, and the center log ratio of the phyla Bacteroidetes and Firmicutes and center log ratio of the families Prevotellaceae, BS11, S24-7, Acidaminococcaceae, Carnobacteriaceae, Lactobacillaceae, Leuconostocaceae, and Streptococcaceae. The provisional NTN4 gene, involved in several functions, had pleiotropy with 10 bacterial families, the phyla Bacteroidetes and Firmicutes, and butyrate. The ATP2CA1 gene, involved in the ATPase secretory pathway for Ca2+ transport, overlapped for the families Prevotellaceae, S24-7, and Streptococcaceae, the phylum Bacteroidetes, and isobutyrate. No genomic markers were associated with milk yield, fat percentage, protein yield, total solids, energy-corrected milk, somatic cell count, rumen pH, ammonia, propionate, valerate, total VFA, and d-, l-, or total lactate concentrations, or probability of being in the high- or medium-risk acidosis groups. Genome-wide associations with the rumen metabolome, microbial taxa, and milk composition were present across a wide geographical and management range of herds, suggesting the existence of markers for the rumen environment but not for acidosis susceptibility. The variation in pathogenesis of ruminal acidosis in the small population of cattle in the high risk for acidosis group and the dynamic nature of the rumen as cows cycle through a bout of acidosis may have precluded the identification of markers for acidosis susceptibility. Despite a limited sample size, this study provides evidence of interactions between the mammalian genome, the rumen metabolome, ruminal bacteria, and milk protein percentage.
Autonomous acoustic recorders reveal complex patterns in avian detection probability
(2017-09) Thompson, Sarah J.; Handel, Colleen M.; McNew, Lance B.
Avian point-count surveys are typically designed to occur during periods when birds are consistently active and singing, but seasonal and diurnal patterns of detection probability are often not well understood and may vary regionally or between years. We deployed autonomous acoustic recorders to assess how avian availability for detection (i.e., the probability that a bird signals its presence during a recording) varied during the breeding season with time of day, date, and weather-related variables at multiple subarctic tundra sites in Alaska, USA, 2013-2014. A single observer processed 2,692 10-minute recordings across 11 site-years. We used time-removal methods to assess availability and used generalized additive models to examine patterns of detectability (joint probability of presence, availability, and detection) for 16 common species. Despite lack of distinct dawn or dusk, most species displayed circadian vocalization patterns, with detection rates generally peaking between 0800 hours and 1200 hours but remaining high as late as 2000 hours for some species. Between 2200 hours and 0500 hours, most species\' detection rates dropped to near 0, signaling a distinctive rest period. Detectability dropped sharply for most species in early July. For all species considered, time-removal analysis indicated nearly 100% likelihood of detection during a 10-minute recording conducted in June, between 0500 hours and 2000 hours. This indicates that non-detections during appropriate survey times and dates were attributable to the species\' absence or that silent birds were unlikely to initiate singing during a 10-minute interval, whereas vocally active birds were singing very frequently. Systematic recordings revealed a gradient of species\' presence at each site, from ubiquitous to incidental. Although the total number of species detected at a site ranged from 16 to 27, we detected only 4 to 15 species on 5% of the site\'s recordings. Recordings provided an unusually detailed and consistent dataset that allowed us to identify, among other things, appropriate survey dates and times for species breeding at northern latitudes. Our results also indicated that more recordings of shorter duration (1-4min) may be most efficient for detecting passerines. Our paper describes in detail the vocalization patterns of subarctic birds based on analysis of >2,600 acoustic recordings. We found that most species were highly detectable immediately upon arrival on breeding areas and that detectability remained high for most hours of the day. Additionally, when processing audio recordings, we found that in any single 10-minute recording, the majority of species detected were noted within the first minute; thus, individuals that are present and available to be detected by song or call tend to be highly detectable during a discrete time interval and more frequent, shorter duration recordings might be a more efficient way to detect the species using a given sampling area.
Bacterial communities in the rumen and feces of lactating Holstein dairy cows are not affected when fed reduced-fat dried distillers’ grains with solubles
(Elsevier BV, 2021-07) Dankwa, A.S.; Humagain, U.; Ishaq, S.L.; Yeoman, C.J.; Clark, S.; Beitz, D.C.; Testroet, E.D.
Reduced-fat dried distillers’ grains with solubles (RF-DDGSs) are co-products of ethanol production and contain less fat than traditional distillers’ grains. The fat in corn is ~91% unsaturated, and it is toxic to rumen microorganisms so it could influence the composition of the rumen microbiome. It has been demonstrated that RF-DDGS is a suitable ration ingredient to support the high-producing dairy cow, and this feedstuff is a promising alternative protein source for lactating dairy cows. The current study aims to better understand the effect of RF-DDGS on the rumen and fecal bacterial composition in lactating dairy cows. Thirty-six multiparous (two or three), mid-lactation Holstein cows (BW = 680 – 11 kg; 106 – 27 DIM) were randomly assigned to two groups which were fed a control diet made up of corn, corn silage, and alfalfa hay supplemented with expeller soybean meal or with added RF-DDGS (20% of the DM) containing approximately 6.0% fat. Whole rumen contents (rumen fluid and digesta; esophageal tubing method) and feces (free-catch method) were collected on day 35 of the experimental period, after the 14-d acclimation period. Rumen contents and feces from each cow were used for DNA extraction. The bacterial community composition in rumen and fecal samples was assessed via the 16S rRNA gene by using the Illumina MiSeq sequencing platform. Bacteroidetes, Actinobacteria, and Firmicutes were the most abundant phyla in rumen contents. The fecal microbiota was dominated by the phyla Firmicutes and Bacteroidetes, as well as Actinobacteria and Chloroflexi. RF-DGGS increased bacterial richness, evenness, and Shannon diversity in both rumen and fecal samples and was associated with several taxa that had different abundance in treatment versus control comparisons. The RF-DGGS, however, did not significantly alter the bacterial community in the rumen or feces. In general, these findings demonstrated that dietary inclusion of RF-DDGS did not impose any serious short-term (within 30 days) health or production consequences, as would be expected. With this study, we present further evidence that inclusion of 20% (DM basis) RF-DDGS in the diet of lactating dairy cows can be done without consequence on the microbiome of the rumen.
Beaver Habitat Selection for 24 Yr Since Reintroduction North of Yellowstone National Park
(2018-01) Scrafford, Matthew A.; Tyers, Daniel B.; Patten, Duncan T.; Sowell, Bok F.
Beavers (Castor canadensis) disappeared from drainages north of Yellowstone National Park in the mid-1900s because of trapping, a potential tularemia outbreak, and willow (Salix spp.) stand degradation by ungulates. Beavers were reintroduced in 1986 after a 40-yr absence with inventories of active-beaver structures completed each fall after reintroduction for 24 consecutive yr. We used this inventory to evaluate the expansion of beaver populations in a riparian environment recovering from past overuse by ungulates. Specifically, we investigated the density of active-beaver colonies and dams, the change in willow cover, and habitats associated with beaver expansion since reintroduction. Successful establishment and expansion of beavers indicate that sufficient resources were available to the population despite the suboptimal condition of riparian vegetation. Carrying capacity on third-order streams was reached approximately 14 yr after reintroduction (2000) with an average annual density of 1.33 (95th percentile = 1.23 - 1.44 active colonies/stream km) between 2000 and 2010. The average annual density of beaver dams during this time was 2.37 (2.04 - 2.71 active dams/stream km). Despite the beaver population being at carrying capacity in meadows since 2000, willow cover increased by 16% between 1981 and 2011. We speculate that beaver activities, together with reduced ungulate browsing from predation and habitat loss, combined to increase willow cover. Willow cover and height were positively associated with colony longevity, but numerous other influencing variables included secondary channels, sinuosity, stream depth, and sandbar width. Our results provide evidence that beaver reintroduction can be successful in riparian areas where willow stand condition is less than optimal and that beavers might ultimately improve willow condition. We suggest that reducing ungulate use of overgrazed riparian environments will facilitate the reestablishment of beaver populations. We also provide managers with habitats that should be identified in an environment targeted for reintroduction.
Biogenic Amines Increase the Odds of Bacterial Vaginosis and Affect the Growth of and Lactic Acid Production by Vaginal Lactobacillus spp.
(American Society for Microbiology, 2021-04) Borgogna, Joanna-Lynn C.; Shardell, Michelle D.; Grace, Savannah G.; Santori, Elisa K.; Americus, Benjamin; Li, Zhong; Ulanov, Alexander; Forney, Larry; Nelson, Tiffanie M.; Brotman, Rebecca M.; Ravel, Jacques; Yeoman, Carl J.
Bacterial vaginosis (BV) is the most common vaginal disorder of reproductive-aged women, yet its etiology remains enigmatic. One clinical symptom of BV, malodor, is linked to the microbial production of biogenic amines (BA). Using targeted liquid chromatography mass spectrometry, we analyzed 149 longitudinally collected vaginal samples to determine the in vivo concentrations of the most common BAs and then assessed their relationship to BV and effect upon the growth kinetics of axenically cultured vaginal Lactobacillus species. Increases in cadaverine, putrescine, and tyramine were associated with greater odds of women transitioning from L. crispatus-dominated vaginal microbiota to microbiota that have a paucity of Lactobacillus spp. and from Nugent scores of 0 to 3 to Nugent scores of 7 to 10, consistent with BV. Exposure to putrescine lengthened the lag time and/or slowed the growth of all vaginal Lactobacillus spp. except L. jensenii 62G. L. iners AB107’s lag time was lengthened by cadaverine but reduced in the presence of spermidine and spermine. The growth rate of L. crispatus VPI 3199 was slowed by cadaverine and tyramine, and strain-specific responses to spermine and spermidine were observed. BAs were associated with reduced production of d- and l-lactic acid by vaginal Lactobacillus spp., and this effect was independent of their effect upon Lactobacillus species growth. The exceptions were higher levels of d- and l-lactic acid by two strains of L. crispatus when grown in the presence of spermine. Results of this study provide evidence of a direct impact of common biogenic amines on vaginal Lactobacillus spp.
Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract
(2018-02) Yeoman, Carl J.; Ishaq, Suzanne L.; Bichi, Elena; Olivo, Sarah K.; Lowe, James; Aldridge, Brian M.
The impact of maternal microbial influences on the early choreography of the neonatal calf microbiome were investigated. Luminal content and mucosal scraping samples were collected from ten locations in the calf gastrointestinal tract (GIT) over the first 21 days of life, along with postpartum maternal colostrum, udder skin, and vaginal scrapings. Microbiota were found to vary by anatomical location, between the lumen and mucosa at each GIT location, and differentially enriched for maternal vaginal, skin, and colostral microbiota. Most calf sample sites exhibited a gradual increase in α-diversity over the 21 days beginning the first few days after birth. The relative abundance of Firmicutes was greater in the proximal GIT, while Bacteroidetes were greater in the distal GIT. Proteobacteria exhibited greater relative abundances in mucosal scrapings relative to luminal content. Forty-six percent of calf luminal microbes and 41% of mucosal microbes were observed in at-least one maternal source, with the majority being shared with microbes on the skin of the udder. The vaginal microbiota were found to harbor and uniquely share many common and well-described fibrolytic rumen bacteria, as well as methanogenic archaea, potentially indicating a role for the vagina in populating the developing rumen and reticulum with microbes important to the nutrition of the adult animal.
Characterizing ruminal acidosis risk: A multiherd, multicountry study
(Elsevier, 2023-03) Golder, H. M.; LeBlanc, S.J.; Duffield, T.; Rossow, H.A.; Bogdanich, R.; Hernandez, L.; Block, E.; Rehberger, J.; Smith, A.H.; Thomson, J.
A multicenter observational study was conducted on early lactation Holstein cows (n = 261) from 32 herds from 3 regions (Australia, AU; California, CA; and Canada, CAN) to characterize their risk of acidosis into 3 groups (high, medium, or low) using a discriminant analysis model previously developed. Diets ranged from pasture supplemented with concentrates to total mixed ration (nonfiber carbohydrates = 17 to 47 and neutral detergent fiber = 27 to 58% of dry matter). Rumen fluid samples were collected <3 h after feeding and analyzed for pH, and ammonia, d- and l-lactate, and volatile fatty acid (VFA) concentrations. Eigenvectors were produced using cluster and discriminant analysis from a combination of rumen pH, and ammonia, d-lactate, and individual VFA concentrations and were used to calculate the probability of the risk of ruminal acidosis based on proximity to the centroid of 3 clusters. Bacterial 16S ribosomal DNA sequence data were analyzed to characterize bacteria. Individual cow milk volume, fat, protein, and somatic cell count values were obtained from the closest herd test to the rumen sampling date (median = 1 d before rumen sampling). Mixed model analyses were performed on the markers of rumen fermentation, production characteristics, and the probability of acidosis. A total of 26.1% of the cows were classified as high risk for acidosis, 26.8% as medium risk, and 47.1% as low risk. Acidosis risk differed among regions with AU (37.2%) and CA (39.2%) having similar prevalence of high-risk cows and CAN only 5.2%. The high-risk group had rumen phyla, fermentation, and production characteristics consistent with a model of acidosis that reflected a rapid rate of carbohydrate fermentation. Namely, an acetate to propionate (1.98 ± 0.11), concentrations of valerate (2.93 ± 0.14 mM), milk fat to protein ratio (1.11 ± 0.047), and a positive association with abundance of phylum Firmicutes. The medium-risk group contains cows that may be inappetant or that had not eaten recently or were in recovery from acidosis. The low-risk group may represent cattle that are well fed with a stable rumen and a slower rumen fermentation of carbohydrates. The high risk for acidosis group had lower diversity of bacteria than the other groups, whereas CAN had a greater diversity than AU and CA. Rumen fermentation profile, abundance of ruminal bacterial phyla, and production characteristics of early lactation dairy cattle from 3 regions were successfully categorized in 3 different acidosis risk states, with characteristics differing between acidosis risk groups. The prevalence of acidosis risk also differed between regions.
Cigarette smoking is associated with an altered vaginal tract metabolomic profile
(2018-01) Nelson, Tiffanie M.; Borgogna, Joanna-Lynn C.; Michalek, R. D.; Roberts, David W.; Rath, J. M.; Glover, E. D.; Ravel, Jacques; Shardell, M. D.; Yeoman, Carl J.; Brotman, Rebecca M.
Cigarette smoking has been associated with both the diagnosis of bacterial vaginosis (BV) and a vaginal microbiota lacking protective Lactobacillus spp. As the mechanism linking smoking with vaginal microbiota and BV is unclear, we sought to compare the vaginal metabolomes of smokers and non-smokers (17 smokers/19 non-smokers). Metabolomic profiles were determined by gas and liquid chromatography mass spectrometry in a cross-sectional study. Analysis of the 16S rRNA gene populations revealed samples clustered into three community state types (CSTs) ---- CST-I (L. crispatus-dominated), CST-III (L. iners-dominated) or CST-IV (low-Lactobacillus). We identified 607 metabolites, including 12 that differed significantly (q-value < 0.05) between smokers and non-smokers. Nicotine, and the breakdown metabolites cotinine and hydroxycotinine were substantially higher in smokers, as expected. Among women categorized to CST-IV, biogenic amines, including agmatine, cadaverine, putrescine, tryptamine and tyramine were substantially higher in smokers, while dipeptides were lower in smokers. These biogenic amines are known to affect the virulence of infective pathogens and contribute to vaginal malodor. Our data suggest that cigarette smoking is associated with differences in important vaginal metabolites, and women who smoke, and particularly women who are also depauperate for Lactobacillus spp., may have increased susceptibilities to urogenital infections and increased malodor.
Colonic aberrant crypt formation accompanies an increase of opportunistic pathogenic bacteria in C57BL/6 mice fed a high-fat diet
(2018-04) Zeng, Huawei; Ishaq, Suzanne L.; Liu, Zhenhua; Bukowsky, Michael R.
The increasing worldwide incidence of colon cancer has been linked to obesity and consumption of a high-fat western diet. To test the hypothesis that a high fat diet (HFD) promotes colonic aberrant crypt (AC) formation in a manner associated with gut bacterial dysbiosis, we examined the susceptibility to azoxymethane (AOM)-induced colonic AC and microbiome composition in C57/BL6 mice fed a modified AIN93G diet (AIN, 16% fat, energy) or a HFD (45% fat, energy) for 14 weeks. Mice receiving the HFD exhibited increased plasma leptin, body weight, body fat composition and inflammatory cell infiltration in the ileum compared with those in the AIN group. Consistent with the gut inflammatory phenotype, we observed an increase in colonic AC, plasma interleukin 6 (IL6), tumor necrosis factor Î± (TNF Î±), monocyte chemoattractant protein 1 (MCP1), and inducible nitric oxide synthase (iNOS) in the ileum of the HFD-AOM group compared with the AIN-AOM group. Although the HFD and AIN groups did not differ in bacterial species number, the HFD and AIN diets resulted in different bacterial community structures in the colon. The abundance of certain short chain fatty acid (SCFA) producing bacteria (e.g., Barnesiella) and fecal SCFA (e.g., acetic acid) content were lower in the HFD-AOM group compared with the AIN and AIN-AOM groups. Furthermore, we identified a high abundance of Anaeroplasma bacteria, an opportunistic pathogen in the HFD-AOM group. Collectively, we demonstrate that a HFD promotes AC formation concurrent with an increase of opportunistic pathogenic bacteria in the colon of C57BL/6 mice.
Combined Herbivory by Targeted Sheep Grazing and Biological Control Insects to Suppress Spotted Knapweed (Centaurea stoebe)
(2016-01) Mosley, Jeffrey C.; Frost, Rachel A.; Roeder, Brent L.; Mosley, Tracy K.; Marks, Gerald
The use of biological control insects is a promising option for suppressing spotted knapweed, a nonindigenous perennial forb that infests more than 3 million hectares of North American rangeland. Efficacy increases when spotted knapweed is attacked by more than one phytophagous insect; however, combined herbivory by biological control insects has not achieved widespread suppression of spotted knapweed in North America. Here we expand the concept of combined herbivory beyond two or more species of biological control insects to include a vertebrate herbivore, specifically targeted grazing by domestic sheep. Our experiment on foothill rangeland in northwestern Montana evaluated spotted knapweed response to three treatments: (1) biological control insects only, (2) biological control insects + targeted sheep grazing applied in late July (spotted knapweed in late bud-early flower stage), and (3) biological control insects + targeted sheep grazing applied in mid-August (spotted knapweed in full-flower stage). We combined targeted sheep grazing with herbivory by three species of biological control insects: knapweed flower weevil, knapweed root weevil, and sulfur knapweed root moth. Treatments were applied during four consecutive years (2009 to 2012). Spotted knapweed fitness was suppressed more where targeted sheep grazing and biological control insects were combined vs. areas treated with biological control insects alone. Combined herbivory was effective when targeted sheep grazing was applied during either late July or mid-August, but July grazing was more effective. Spotted knapweed produced 96 to 99% fewer viable seeds in sheep-grazed areas. After 4 yr of treatment, total spotted knapweed plant density (seedlings, juvenile, and adult plants) was 86% less in July-grazed areas and 61% less in August-grazed areas than in areas treated with biological control insects alone. Combined herbivory by targeted sheep grazing and biological control insects reduced adult plant density and prevented compensatory recruitment of spotted knapweed, but treatment with biological control insects alone did not.
Conceptualization and implementation of the Fiber Utilization and Cell Wall Constituents Symposium
(Oxford University Press, 2023-01) Smith, W B; Wyffels, S A; Gekara, O J
Understanding how ruminants break down plant cell walls and digest plant fibers can help improve the efficiency of livestock production
Differences in amino acid catabolism by gut microbes with/without prebiotics inclusion in GDDY-based diet affect feed utilization in rainbow trout
(2017-09) Betiku, Omolola C.; Yeoman, Carl J.; Gaylord, T. Gibson; Duff, Glenn C.; Hamerly, Timothy; Bothner, Brian; Block, Stephanie S.; Sealey, Wendy M.
There is the need to enhance feed efficiency and growth of rainbow trout to reduce production costs of cultured fish. This study conducted a 3 × 4 factorial experiment with three graded levels of grain distiller dried yeast (GDDY) protein (0%, 50%, 75%) as replacement for fishmeal and four different prebiotics inclusion levels (0% (control), 0.4%, 1% mannooligosaccharides (MOS), and 1% GroBiotic A). The feeding trial was conducted for 12 weeks during which fish were fed daily to apparent satiation. Growth of rainbow trout was not affected by replacement of fishmeal with GDDY, but feed conversion ratio (P < 0.0001) was greater at the highest level of GDDY inclusion. Increasing GDDY inclusion significantly increased feed intake (P < 0.00015), which resulted in poor feed utilization. Acetic (P = 0.1994), propionic (P = 0.8037), butyric (P = 0.6268), valeric (P = 0.5877), and isovaleric (P = 0.5919) acids profiles did not differ by diet nor with inclusion of MOS or GroBiotic A. Whole shotgun metagenomic analyses of the gastrointestinal tract (GIT) microbiota revealed enrichment in the fungal phyla Ascomycota and Basidiomycota and the bacterial phylum Actinobacteria in the GDDY-fed fish compared to those fed the control fishmeal-based diet, which may be reflective of the species endogenous in GDDY. Microbial genes involved in branched-chain amino acid metabolism (glutamate, glutamine, aspartate) (P = 0.028) and glutamate dehydrogenase clusters (P = 0.0192), were also elevated in the fish fed the 75% GDDY-based diet. The results from this study indicate the potential for microbially-mediated catabolism of the non-essential amino acids, and suggest this activity may significantly influence efficient utilization of dietary nitrogen in the yeast-based protein diet.
Different combinations of monensin and narasin on growth performance, carcass traits, and ruminal fermentation characteristics of finishing beef cattle
(Frontiers Media SA, 2023-04) Baggio, Marcelo; Gouvêa, Vinícius N.; Barroso, José Paulo R.; Miszura, Alexandre A.; Limede, Arnaldo C.; Soares, Letícia C. B.; Ferraz, Marcos Vinicius C.; Vicente, Ana Carolina S.; Ferreira, Evandro M.; Marques, Rodrigo S.; Pires, Alexandre V.
The objective of this study was to evaluate the effects of different combinations of monensin and narasin on finishing cattle. In Exp. 1, 40 rumen-cannulated Nellore steers [initial body weight (BW) = 231 ± 3.64 kg] were blocked by initial BW and assigned to one of the five treatments as follows: Control (CON): no feed additive in the basal diet during the entire feeding period; Sodium monensin (MM) at 25 mg/kg dry matter (DM) during the entire feeding period [adaptation (days 1–21) and finishing (days 22–42) periods]; Narasin (NN) at 13 mg/kg DM during the entire feeding period (adaptation and finishing periods); Sodium monensin at 25 mg/kg DM during the adaptation period and narasin at 13 mg/kg DM during the finishing period (MN); and narasin at 13 mg/kg DM during the adaptation period and sodium monensin at 25 mg/kg DM during the finishing period (NM). Steers fed MM had lower dry matter intake (DMI) during the adaptation period compared to NM (P = 0.02) but not compared to CON, MM, MN, or NN (P ≥ 0.12). No differences in DMI were observed among the treatments during the finishing (P = 0.45) or the total feeding period (P = 0.15). Treatments did not affect the nutrient intake (P ≥ 0.51) or the total apparent digestibility of nutrients (P ≥ 0.22). In Exp. 2, 120 Nellore bulls (initial BW = 425 ± 5.4 kg) were used to evaluate the effects of the same treatments of Exp. 1 on growth performance and carcass characteristics of finishing feedlot cattle. Steers fed NM had greater DMI during the adaptation period compared to CON, MM, and MN (P ≤ 0.03), but no differences were observed between NM and NN (P = 0.66) or between CON, MM, and NN (P ≥ 0.11). No other differences between treatments were observed (P ≥ 12). Feeding narasin at 13 mg/kg DM during the adaptation period increases the DMI compared to monensin at 25 mg/kg DM, but the feed additives evaluated herein did not affect the total tract apparent digestibility of nutrients, growth performance, or carcass characteristics of finishing cattle.
Differential haptoglobin responsiveness to a Mannheimia haemolytica challenge altered immunologic, physiologic, and behavior responses in beef steers
(Oxford University Press, 2021-01) Wottlin, Lauren R.; Carstens, Gordon E.; Kayser, William C.; Pinchak, William E.; Thomson, Jennifer M.; Copie, Valerie; O'Shea-Stone, Galen P.
Indicator traits associated with disease resiliency would be useful to improve the health and welfare of feedlot cattle. A post hoc analysis of data collected previously (Kayser et al., 2019a) was conducted to investigate differences in immunologic, physiologic, and behavioral responses of steers (N = 36, initial BW = 386 ± 24 kg) that had differential haptoglobin (HPT) responses to an experimentally induced challenge with Mannheimia haemolytica (MH). Rumen temperature, DMI, and feeding behavior data were collected continuously, and serial blood samples were collected following the MH challenge. Retrospectively, it was determined that 9 of the 18 MH-challenged steers mounted a minimal HPT response, despite having similar leukocyte and temperature responses to other MH-challenged steers with a greater HPT response. Our objective was to examine differences in behavioral and physiological responses between MH-challenged HPT responsive (RES; n = 9), MH-challenged HPT nonresponsive (NON; n = 9), and phosphate-buffered saline-inoculated controls (CON; n = 18). Additionally, 1H NMR analysis was conducted to determine whether the HPT-responsive phenotype affected serum metabolite profiles. The RES steers had lesser (P < 0.05) cortisol concentrations than NON and CON steers. The magnitude of the increases in neutrophil concentrations and rumen temperature, and the reduction in DMI following the MH challenge were greatest (P < 0.05) in RES steers. Univariate analysis of serum metabolites indicated differences between RES, NON, and CON steers following the MH challenge; however, multivariate analysis revealed no difference between HPT-responsive phenotypes. Prior to the MH challenge, RES steers had longer (P < 0.05) head down and bunk visit durations, slower eating rates (P < 0.01) and greater (P < 0.05) daily variances in bunk visit frequency and head down duration compared with NON steers, suggesting that feeding behavior patterns were associated with the HPT-responsive phenotype. During the 28-d postchallenge period, RES steers had decreased (P < 0.05) final BW, tended (P = 0.06) to have lesser DMI, and had greater (P < 0.05) daily variances in head down and bunk visit durations compared with NON steers, which may have been attributed to their greater acute-phase protein response to the MH challenge. These results indicate that the HPT-responsive phenotype affected feeding behavior patterns and may be associated with disease resiliency in beef cattle.
Direct Phenotyping and Principal Component Analysis of Type Traits Implicate Novel QTL in Bovine Mastitis through Genome-Wide Association
(MDPI AG, 2021-04) Miles, Asha M.; Posbergh, Christian J.; Huson, Heather J.
Our objectives were to robustly characterize a cohort of Holstein cows for udder and teat type traits and perform high-density genome-wide association studies for those traits within the same group of animals, thereby improving the accuracy of the phenotypic measurements and genomic association study. Additionally, we sought to identify a novel udder and teat trait composite risk index to determine loci with potential pleiotropic effects related to mastitis. This approach was aimed at improving the biological understanding of the genetic factors influencing mastitis. Cows (N = 471) were genotyped on the Illumina BovineHD777k beadchip and scored for front and rear teat length, width, end shape, and placement; fore udder attachment; udder cleft; udder depth; rear udder height; and rear udder width. We used principal component analysis to create a single composite measure describing type traits previously linked to high odds of developing mastitis within our cohort of cows. Genome-wide associations were performed, and 28 genomic regions were significantly associated (Bonferroni-corrected p < 0.05). Interrogation of these genomic regions revealed a number of biologically plausible genes whicht may contribute to the development of mastitis and whose functions range from regulating cell proliferation to immune system signaling, including ZNF683, DHX9, CUX1, TNNT1, and SPRY1. Genetic investigation of the risk composite trait implicated a novel locus and candidate genes that have potentially pleiotropic effects related to mastitis.
Dryland Cropping Systems, Weed Communities, and Disease Status Modulate the Effect of Climate Conditions on Wheat Soil Bacterial Communities
(2020-08) Ishaq, Suzanne L.; Seipel, Tim F.; Yeoman, Carl J.; Menalled, Fabian D.
Little knowledge exists on how soil bacteria in agricultural settings are impacted by management practices and environmental conditions in current and predicted climate scenarios. We assessed the impact of soil moisture, soil temperature, weed communities, and disease status on soil bacterial communities in three cropping systems: (i) conventional no-till (CNT) systems utilizing synthetic pesticides and herbicides, (ii) USDA-certified tilled organic (OT) systems, and (iii) USDA-certified organic systems with sheep grazing (OG). Sampling date within the growing season and associated soil temperature and moisture exerted the greatest effect on bacterial communities, followed by cropping system, Wheat streak mosaic virus (WSMV) infection status, and weed community. Soil temperature was negatively correlated with bacterial richness and evenness, while soil moisture was positively correlated with bacterial richness and evenness. Soil temperature and soil moisture independently altered soil bacterial community similarity between treatments. Inoculation of wheat with WSMV altered the associated soil bacteria, and there were interactions between disease status and cropping system, sampling date, and climate conditions, indicating the effect of multiple stressors on bacterial communities in soil. In May and July, cropping system altered the effect of climate change on the bacterial community composition in hotter conditions and in hotter and drier conditions compared to ambient conditions, in samples not treated with WSMV. Overall, this study indicates that predicted climate modifications as well as biological stressors play a fundamental role in the impact of cropping systems on soil bacterial communities.
Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla)
(2016-11) Vickova, Klara; Gomez, Andres; Whittier, Christopher A.; Todd, Angelique F.; Yeoman, Carl J.; Nelson, Karen E.; Wilson, Brenda A.; Stumpf, Rebecca M.; Modry, David; White, Bryan A.; Leigh, Steven R.
The mammalian gastrointestinal (GI) microbiome, which plays indispensable roles in host nutrition and health, is affected by numerous intrinsic and extrinsic factors. Among them, antibiotic (ATB) treatment is reported to have a significant effect on GI microbiome composition in humans and other animals. However, the impact of ATBs on the GI microbiome of free-ranging or even captive great apes remains poorly characterized. Here, we investigated the effect of cephalosporin treatment (delivered by intramuscular dart injection during a serious respiratory outbreak) on the GI microbiome of a wild habituated group of western lowland gorillas (Gorilla gorilla gorilla) in the Dzanga Sangha Protected Areas, Central African Republic. We examined 36 fecal samples from eight individuals, including samples before and after ATB treatment, and characterized the GI microbiome composition using Illumina-MiSeq sequencing of the bacterial 16S rRNA gene. The GI microbial profiles of samples from the same individuals before and after ATB administration indicate that the ATB treatment impacts GI microbiome stability and the relative abundance of particular bacterial taxa within the colonic ecosystem of wild gorillas. We observed a statistically significant increase in Firmicutes and a decrease in Bacteroidetes levels after ATB treatment. We found disruption of the fibrolytic community linked with a decrease of Ruminoccocus levels as a result of ATB treatment. Nevertheless, the nature of the changes observed after ATB treatment differs among gorillas and thus is dependent on the individual host. This study has important implications for ecology, management, and conservation of wild primates.