Connolly, James Martin2015-04-172015-04-172015-04Connolly JM (2015) Appendix C: Raw and thresholded images relating to Chapter 5 [dataset]. Montana State University ScholarWorks. https://doi.org/10.15788/M2WC7Bftp://scholarworks:scholarworks@dtn.rci.montana.edu/10.15788/0 - Raw Data: Raw .lif files (Leica Inc.) that contain the 3D confocal image stacks. Metadata contained in these files hold image aquisition data (microscope settings).1 - MaxProjectImages: Raw data with a maximum projection performed to produce a 2D image from the raw 3D data. 2 - CropAndRotated: MaxProjectImages rotated and cropped to show data only from the porous media section of the reactor. 3 - Threshold: Binary images.This dataset constitutes Appendix C: Raw and thresholded images relating to Chapter 5 of "Biofilm-induced carbonate precipitation at the pore-scale." To download the dataset using FTP, please use this link: ftp://scholarworks:scholarworks@dtn.rci.montana.edu/10.15788/Dataset