Appendix C: Raw and thresholded images relating to Chapter 5 [dataset]
Connolly, James Martin
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This dataset constitutes Appendix C: Raw and thresholded images relating to Chapter 5 of "Biofilm-induced carbonate precipitation at the pore-scale." To download the dataset using FTP, please use this link: ftp://scholarworks:firstname.lastname@example.org/10.15788/
0 - Raw Data: Raw .lif files (Leica Inc.) that contain the 3D confocal image stacks. Metadata contained in these files hold image aquisition data (microscope settings).1 - MaxProjectImages: Raw data with a maximum projection performed to produce a 2D image from the raw 3D data. 2 - CropAndRotated: MaxProjectImages rotated and cropped to show data only from the porous media section of the reactor. 3 - Threshold: Binary images.
Connolly JM (2015) Appendix C: Raw and thresholded images relating to Chapter 5 [dataset]. Montana State University ScholarWorks. https://doi.org/10.15788/M2WC7B