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dc.contributor.authorDash, Sudhansu
dc.contributor.authorCampbell, Jacqueline D.
dc.contributor.authorCannon, Ethalinda K.S.
dc.contributor.authorCleary, Alan M.
dc.contributor.authorHuang, Wei
dc.contributor.authorKalberer, Scott R.
dc.contributor.authorKaringula, Vijay
dc.contributor.authorRice, Alex G.
dc.contributor.authorSingh, Jugpreet
dc.contributor.authorUmale, Pooja E.
dc.contributor.authorWeeks, Nathan T.
dc.contributor.authorWilkey, Andrew P.
dc.contributor.authorFarmer, Andrew D.
dc.contributor.authorCannon, Steven B.
dc.date.accessioned2016-02-05T18:40:42Z
dc.date.available2016-02-05T18:40:42Z
dc.date.issued2016-01
dc.identifier.citationDash, Sudhansu, Jacqueline D. Campbell, Ethalinda K.S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, et al. “Legume Information System (LegumeInfo.org): a Key Component of a Set of Federated Data Resources for the Legume Family.” Nucleic Acids Research 44, no. D1 (November 5, 2015): D1181–D1188. doi:10.1093/nar/gkv1159.en_US
dc.identifier.issn0305-1048
dc.identifier.urihttps://scholarworks.montana.edu/xmlui/handle/1/9530
dc.description.abstractLegume Information System (LIS), at http://legumeinfo.org, is a genomic data portal (GDP) for the legume family. LIS provides access to genetic and genomic information for major crop and model legumes. With more than two-dozen domesticated legume species, there are numerous specialists working on particular species, and also numerous GDPs for these species. LIS has been redesigned in the last three years both to better integrate data sets across the crop and model legumes, and to better accommodate specialized GDPs that serve particular legume species. To integrate data sets, LIS provides genome and map viewers, holds synteny mappings among all sequenced legume species and provides a set of gene families to allow traversal among orthologous and paralogous sequences across the legumes. To better accommodate other specialized GDPs, LIS uses open-source GMOD components where possible, and advocates use of common data templates, formats, schemas and interfaces so that data collected by one legume research community are accessible across all legume GDPs, through similar interfaces and using common APIs. This federated model for the legumes is managed as part of the ‘Legume Federation’ project (accessible via http://legumefederation.org), which can be thought of as an umbrella project encompassing LIS and other legume GDPsen_US
dc.description.sponsorshipNational Science Foundation IOS-1444806;en_US
dc.titleLegume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume familyen_US
dc.typeArticleen_US
mus.citation.extentfirstpageD1181en_US
mus.citation.extentlastpageD1188en_US
mus.citation.issueD1en_US
mus.citation.journaltitleNucleic Acids Researchen_US
mus.citation.volume44en_US
mus.identifier.categoryEngineering & Computer Scienceen_US
mus.identifier.categoryLife Sciences & Earth Sciencesen_US
mus.identifier.doi10.1093/nar/gkv1159en_US
mus.relation.collegeCollege of Engineeringen_US
mus.relation.departmentComputer Science.en_US
mus.relation.universityMontana State University - Bozemanen_US
mus.data.thumbpage4en_US


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