Browsing by Author "Brown, Jennifer R."

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Biopolymer and water dynamics in microbial biofilm extracellular polymeric substance
(2008-09) Hornemann, Jennifer A.; Lysova, Anna A.; Codd, Sarah L.; Seymour, Joseph D.; Busse, S.; Stewart, Philip S.; Brown, Jennifer R.
Nuclear magnetic resonance (NMR) is a noninvasive and nondestructive tool able to access several observable quantities in biofilms such as chemical composition, diffusion, and macroscale structure and transport. Pulsed gradient spin echo (PGSE) NMR techniques were used to measure spectrally resolved biomacromolecular diffusion in biofilm biomass, extending previous research on spectrally resolved diffusion in biofilms. The dominant free water signal was nulled using an inversion recovery modification of the traditional PGSE technique in which the signal from free water is minimized in order to view the spectra of components such as the rotationally mobile carbohydrates, DNA, and proteins. Diffusion data for the major constituents obtained from each of these spectral peaks demonstrate that the biomass of the biofilm contains both a fast and slow diffusion component. The dependence of diffusion on antimicrobial and environmental challenges suggests the polymer molecular dynamics measured by NMR are a sensitive indicator of biofilm function.
Characterization of velocity fluctuations and the transition from transient to steady state shear banding with and without pre-shear in a wormlike micelle solution under shear startup by Rheo-NMR
(2020-04) Al-kaby, Rehab N.; Codd, Sarah L.; Seymour, Joseph D.; Brown, Jennifer R.
Rheo-NMR velocimetry was used to study shear banding of a 6 wt.% cetylpyridinium chloride (CPCl) worm-like micelle solution under shear startup conditions with and without pre-shear. 1D velocity profiles across the fluid gap of a concentric cylinder Couette shear cell were measured every 1 s following shear startup for four different applied shear rates within the stress plateau. Fitting of the velocity profiles allowed calculation of the shear banding characteristics (shear rates in the high and low shear band, the interface position and apparent slip at the inner rotating wall) as the flow transitioned from transient to steady state regimes. Characteristic timescales to reach steady state were obtained and found to be similar for all shear banding characteristics. Timescales decreased with increasing applied shear rate. Large temporal fluctuations with time were also observed and Fourier transform of the time and velocity autocorrelation functions quantified the fluctuation frequencies. Frequencies corresponded to the elastically driven hydrodynamic instabilities, i.e. vortices, that are known to occur in the unstable high shear band and were dependent upon both applied shear rate and the pre-shear protocol.
Magnetic resonance microscopy of biofilm and bioreactor transport
(2006-02) Codd, Sarah L.; Seymour, Joseph D.; Gjersing, Erica L.; Gage, Justin P.; Brown, Jennifer R.
Microbial and algal alginate gelation characterized by magnetic resonance
(2012-10) Fabich, H. T.; Vogt, Sarah J.; Sherick, Matthew L.; Seymour, Joseph D.; Brown, Jennifer R.; Franklin, Michael J.; Codd, Sarah L.
Advanced magnetic resonance (MR) relaxation and diffusion correlation measurements and imaging provide a means to non-invasively monitor gelation for biotechnology applications. In this study, MR is used to characterize physical gelation of three alginates with distinct chemical structures; an algal alginate, which is not O-acetylated but contains poly guluronate (G) blocks, bacterial alginate from Pseudomonas aeruginosa, which does not have poly-G blocks, but is O-acetylated at the C2 and/or C3 of the mannuronate residues, and alginate from a P. aeruginosa mutant that lacks O-acetyl groups. The MR data indicate that diffusion-reaction front gelation with Ca2+ ions generates gels of different bulk homogeneities dependent on the alginate structure. Shorter spinâ€“spin T2 magnetic relaxation times in the alginate gels that lack O-acetyl groups indicate stronger molecular interaction between the water and biopolymer. The data characterize gel differences over a hierarchy of scales from molecular to system size.
Quantification of non-Newtonian fluid dynamics of a wormlike micelle solution in porous media with magnetic resonance
(2017-12) Brown, Jennifer R.; Trudnowski, Jacob D.; Nybo, Elmira; Kent, Katherine E.; Lund, Thomas; Parsons, Amanda
Nuclear magnetic resonance (NMR) pulsed gradient stimulated echo (PGStE) techniques were used to observe anomalous transport phenomena for flow of a non-Newtonian wormlike micelle solution through a model porous media. Understanding the flow behavior of wormlike micelle solutions in porous media is important due to the growing interest of these solutions in enhanced oil recovery. NMR velocity imaging was unable to discern differences in the flow field between shear-thickening wormlike micelle solution and water due to spatial resolution limitations. However, the probability of displacement, i.e. the propagator, was skewed towards slower velocities and long tails at high displacements for the micelle solution and incorporation of a fractional dynamics approach using the moments of the probability distribution showed a deviation from asymptotic Gaussian statistics.
Recrystallization inhibition in ice due to ice binding protein activity detected by nuclear magnetic resonance
(2014-09) Brown, Jennifer R.; Seymour, Joseph D.; Brox, T. I.; Skidmore, Mark L.; Wang, Chen; Christner, Brent C.; Luo, B. H.; Codd, Sarah L.
Liquid water present in polycrystalline ice at the interstices between ice crystals results in a network of liquid-filled veins and nodes within a solid ice matrix, making ice a low porosity porous media. Here we used nuclear magnetic resonance (NMR) relaxation and time dependent self-diffusion measurements developed for porous media applications to monitor three dimensional changes to the vein network in ices with and without a bacterial ice binding protein (IBP). Shorter effective diffusion distances were detected as a function of increased irreversible ice binding activity, indicating inhibition of ice recrystallization and persistent small crystal structure. The modification of ice structure by the IBP demonstrates a potential mechanism for the microorganism to enhance survivability in ice. These results highlight the potential of NMR techniques in evaluation of the impact of IBPs on vein network structure and recrystallization processes; information useful for continued development of ice-interacting proteins for biotechnology applications.