Browsing by Author "Seipel, Tim F."

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Compositional profiling of the rhizosphere microbiome of Canada thistle reveals consistent patterns across the United States northern Great Plains
(Springer Science and Business Media LLC, 2024) Eberly, Jed O.; Hurd, Asa; Oli, Dipiza; Dyer, Alan T.; Seipel, Tim F.; Carr, Patrick M.
Canada thistle is a pervasive perennial weed, causing challenges to agricultural and natural ecosystems globally. Although research has focused on the phenology, genetics, and control of Canada thistle, little is known about the rhizosphere microbiome and the role plant–microbe interactions play in invasion success. This study investigated the rhizosphere microbiome of Canada thistle across diverse climates, soils, and crops in the U.S. northern Great Plains. Soil and rhizosphere samples were collected and bacterial 16S and fungal ITS2 sequencing were performed to characterize the core microbiome and identify potential factors contributing to invasion success. Amplicon sequencing revealed a stable core microbiome that was detected in the Canada thistle rhizosphere across all locations. The core microbiome was dominated by the bacterial phyla Actinobacteriota and Proteobacteria and fungal phyla Ascomycota and Basidiomycota. Differential abundance analysis showed rhizosphere fungal communities were enriched in pathogen-containing genera with a 1.7-fold greater abundance of Fusaria and a 2.6-fold greater abundance of Gibberella compared to bulk soil. Predictive functional profiling showed rhizosphere communities were enriched (p < 0.05, FDR corrected) in plant pathogen fungal guilds which represented 19% of the fungal community. The rhizosphere microbiome was similar in composition across environments, highlighting the stable association between Canada thistle and specific microbial taxa. This study characterized the core microbiome of Canada thistle, and the findings highlight plant–microbe interactions shaping invasive behavior. These findings are important for understanding the ecological impacts of plant invasion and soil-microbe ecological processes.
Compositional profiling of the rhizosphere microbiome of Canada thistle reveals consistent patterns across the United States northern Great Plains
(Springer Science and Business Media LLC, 2024-08) Eberly, Jed O.; Hurd, Asa; Oli, Dipiza; Dyer, Alan T.; Seipel, Tim F.; Carr, Patrick M.
Canada thistle is a pervasive perennial weed, causing challenges to agricultural and natural ecosystems globally. Although research has focused on the phenology, genetics, and control of Canada thistle, little is known about the rhizosphere microbiome and the role plant–microbe interactions play in invasion success. This study investigated the rhizosphere microbiome of Canada thistle across diverse climates, soils, and crops in the U.S. northern Great Plains. Soil and rhizosphere samples were collected and bacterial 16S and fungal ITS2 sequencing were performed to characterize the core microbiome and identify potential factors contributing to invasion success. Amplicon sequencing revealed a stable core microbiome that was detected in the Canada thistle rhizosphere across all locations. The core microbiome was dominated by the bacterial phyla Actinobacteriota and Proteobacteria and fungal phyla Ascomycota and Basidiomycota. Differential abundance analysis showed rhizosphere fungal communities were enriched in pathogen-containing genera with a 1.7-fold greater abundance of Fusaria and a 2.6-fold greater abundance of Gibberella compared to bulk soil. Predictive functional profiling showed rhizosphere communities were enriched (p < 0.05, FDR corrected) in plant pathogen fungal guilds which represented 19% of the fungal community. The rhizosphere microbiome was similar in composition across environments, highlighting the stable association between Canada thistle and specific microbial taxa. This study characterized the core microbiome of Canada thistle, and the findings highlight plant–microbe interactions shaping invasive behavior. These findings are important for understanding the ecological impacts of plant invasion and soil-microbe ecological processes.
Cropping systems alter plant volatile emissions in the field through soil legacy effects
(Cambridge University Press, 2022-06) Malone, Shealyn C.; Menalled, Fabian D.; Weaver, David K.; Seipel, Tim F.; Hofland, Megan L.; Runyon, Justin B.; Bourgault, Maryse; Boss, Darrin L.; Trowbridge, Amy M.
Crops emit a variety of volatile organic compounds (VOCs) that serve as attractants or repellents for pests and their natural enemies. Crop rotations, off-farm chemical inputs, and mechanical and cultural tactics – collectively called cropping systems – alter soil nutrients, moisture content, and microbial communities, all of which have the potential to alter crop VOC emissions. Soil legacy effects of diversified cropping systems have been shown to enhance crop VOC emissions in greenhouse studies, but how they influence emissions under field conditions remains virtually unknown. To determine the effect of cropping systems on plant VOC emissions in the field, air samples were collected from the headspace of wheat (Triticum aestivum L. Judee) grown in simplified wheat-fallow rotations or diversified wheat-cover crop rotations where cover crops were terminated by grazing cattle. Across two growing seasons, wheat grown in rotation with fallow emitted greater amounts of Z-3-hexenyl acetate and β-ocimene, key attractants for wheat stem sawfly (Cephus cinctus Norton), a major pest of wheat. While overall VOC blends were relatively similar among cropping system during the first growing season, emissions varied substantially in the second year of this study where wheat grown in rotation with cover crops emitted substantially greater quantities of volatile compounds characteristic of abiotic stress. Below-average precipitation in the second growing season, in addition to reduced soil water content in cover crop rotations, suggests that cropping system effects on wheat VOCs may have been driven primarily by water availability, a major factor limiting crop growth in dryland agriculture. While the specific mechanisms driving changes in VOC emissions were not explicitly tested, this work shows that agricultural practices applied in one growing season can differentially influence crop VOC emissions in the next through soil legacy effects, illustrating additional avenues through which cropping systems may be leveraged to enhance pest management.
Disturbance type influences resilience and resistance to Bromus tectorum invasion in the sagebrush steppe
(2018-03) Seipel, Tim F.; Rew, Lisa J.; Taylor, Kimberley T.
Question: How does type of disturbance alter plant community composition when an invasive species with high intrinsic population growth rate is present? The sage-brush steppe is a cold semi-arid steppe dominated by the native shrub Artemisia tri-dentata Nutt., native bunchgrasses, and has been invaded by the non- native winter annual Bromus tectorum L.Location: Sagebrush steppe, Montana, USA.Methods: We assessed the effect of fire and soil disturbance, due to bulldozing to create a firebreak, on the resilience of plant communities and their resistance to inva-sion by B. tectorum. Plant species richness and species composition were monitored for 3 years at two sites post-fire and firebreak construction.Results: Burned plant communities were resilient and had similar native grass cover and native species richness compared with the unburned sites after 3 years. Soil dis-turbance from firebreak construction resulted in species composition that was dis-tinct and had lower native grass cover. Type of disturbance also affected the community’s resistance to B. tectorum. Bromus tectorum cover was similar in burned and unburned areas, but increased up to three times and remained high where soil disturbance occurred, suggesting a shift to an alternative state.Conclusion: In this northern portion of the sagebrush steppe, communities with na-tive plant cover were resilient to fire but not soil disturbance, which facilitated B. tec-torum increase and a transition to an alternative state. In areas of high native plant cover, management tactics should avoid soil disturbance.
Dryland Cropping Systems, Weed Communities, and Disease Status Modulate the Effect of Climate Conditions on Wheat Soil Bacterial Communities
(2020-08) Ishaq, Suzanne L.; Seipel, Tim F.; Yeoman, Carl J.; Menalled, Fabian D.
Little knowledge exists on how soil bacteria in agricultural settings are impacted by management practices and environmental conditions in current and predicted climate scenarios. We assessed the impact of soil moisture, soil temperature, weed communities, and disease status on soil bacterial communities in three cropping systems: (i) conventional no-till (CNT) systems utilizing synthetic pesticides and herbicides, (ii) USDA-certified tilled organic (OT) systems, and (iii) USDA-certified organic systems with sheep grazing (OG). Sampling date within the growing season and associated soil temperature and moisture exerted the greatest effect on bacterial communities, followed by cropping system, Wheat streak mosaic virus (WSMV) infection status, and weed community. Soil temperature was negatively correlated with bacterial richness and evenness, while soil moisture was positively correlated with bacterial richness and evenness. Soil temperature and soil moisture independently altered soil bacterial community similarity between treatments. Inoculation of wheat with WSMV altered the associated soil bacteria, and there were interactions between disease status and cropping system, sampling date, and climate conditions, indicating the effect of multiple stressors on bacterial communities in soil. In May and July, cropping system altered the effect of climate change on the bacterial community composition in hotter conditions and in hotter and drier conditions compared to ambient conditions, in samples not treated with WSMV. Overall, this study indicates that predicted climate modifications as well as biological stressors play a fundamental role in the impact of cropping systems on soil bacterial communities.
Herbivore-induced volatile emissions are altered by soil legacy effects in cereal cropping systems
(2020-08) Malone, Shealyn C.; Weaver, David K.; Seipel, Tim F.; Menalled, Fabian D.; Hofland, Megan L.; Runyon, Justin B.; Trowbridge, Amy M.
Aims Soil properties, including microbial composition and nutrient availability, can influence the emissions of plant volatile organic compounds (VOCs) that serve as host-location cues for insect pests and their natural enemies. Agricultural practices have profound effects on soil properties, but how these influence crop VOCs remains largely unknown. The aim of this study was to investigate the effect of agricultural practices on constitutive and herbivore-induced VOC emissions by a major staple crop through soil legacy effects. Methods In a full factorial experiment, we measured VOC emissions by wheat (Triticum aestivum) grown in soil inoculum from wheat-fallow or wheat-cover crop rotations that was subjected to feeding by larval Cephus cinctus. Results Under herbivory, plants grown in cover crop inoculum emitted greater total VOCs, including higher concentrations of 2-pentadecanone, an insect repellent, and nonanal, a compound important in the recruitment of natural enemies. Plants grown in fallow inoculum showed no differences in emissions whether under herbivory or not. Soil inoculum did not influence VOC emissions of plants in the absence of larval feeding. Conclusions These results suggest that agricultural practices influence crop VOC emissions through soil legacy effects. Additionally, crops grown in wheat-fallow rotations may be less successful recruiting natural enemies of pests through herbivore-induced VOC signaling. Abbreviations Volatile organic compounds (VOCs); herbivore-induced plant volatiles (HIPV); green leaf volatiles (GLVs); northern Great Plains (NGP); wheat stem sawfly (WSS); gas chromatography-mass spectrometry (GC-MS); non-metric multidimensional scaling (NMDS); generalized linear mixed-effects model (GLMM).
Impacts of Dryland Cropping Systems on Ground Beetle Communities (Coleoptera: Carabidae) in the Northern Great Plains
(Oxford University Press, 2021-01) DuPre, Mary E.; Weaver, David K.; Seipel, Tim F.; Menalled, Fabian D.
Ground beetles are natural predators of insect pests and small seeds in agroecosystems. In semiarid cropping systems of the Northern Great Plains, there is a lack of knowledge to how ground beetles are affected by diversified cover crop rotations. In a 2-yr study (2018 and 2019), our experiment was a restricted-randomization strip-plot design, comprising summer fallow, an early-season cover crop mixture (five species), and a mid-season cover crop mixture (seven species), with three cover crop termination methods (i.e., herbicide, grazing, and haying). Using pitfall traps, we sampled ground beetles in five 48-h intervals throughout the growing season (n = 135 per year) using growing degree day (GDD) accumulations to better understand changes to ground beetle communities. Data analysis included the use of linear mixed-effects models, perMANOVA, and non-metric multidimensional scaling ordinations. We did not observe differences among cover crop termination methods; however, activity density in the early-season cover crop mixture decreased and in summer fallow increased throughout the growing season, whereas the mid-season cover crop mixture peaked in the middle of the summer. Ground beetle richness and evenness showed a nonlinear tendency, peaking in the middle of the growing season, with marginal differences between cover crops or fallow after the termination events. Also, differences in ground beetle composition were greatest in the early- and mid-season cover crop mixtures earlier in the growing season. Our study supports the use of cover crop mixtures to enhance ground beetle communities, with potential implications for pest management in dryland cropping systems.
Integrated Management of Cheatgrass (Bromus tectorum) with Sheep Grazing and Herbicide
(2019-06) Lehnhoff, Erik A.; Rew, Lisa J.; Mangold, Jane M.; Seipel, Tim F.; Ragen, Devon
Cheatgrass (Bromus tectorum L.) is one of the most problematic weeds in western United States rangelands and sagebrush steppe. It responds positively to different forms of disturbance, and its management has proven difficult. Herbicide or targeted grazing alone often fail to provide adequate long-term control. Integrating both may afford better control by providing multiple stressors to the weed. We assessed herbicide application, targeted sheep grazing and integrated herbicide and grazing on B. tectorum and the plant community in rangeland in southwestern Montana from 2015 until 2017. Herbicide treatments included spring-applied (May 2015 and 2016) glyphosate, fall-applied (October 2015) glyphosate, imazapic and rimsulfuron, and spring-applied glyphosate plus fall-applied imazapic. Targeted grazing, consisting of four sheep/0.01 ha for a day in 5 m x 20 m plots (all vegetation removed to the ground surface), occurred twice (May 2015 and 2016). While no treatments reduced B. tectorum biomass or seed production, grazing integrated with fall-applied imazapic or rimsulfuron reduced B. tectorum cover from approximately 26% to 14% in 2016 and from 33% to 16% in 2017, compared to ungrazed control plots, and by an even greater amount compared to these herbicides applied without grazing. By 2017, all treatments except spring-applied glyphosate increased total plant cover (excluding
Mountain roads and non-native species modify elevational patterns of plant diversity
(2018-06) Haider, Sylvia; Kueffer, Christoph; Bruelheide, Helge; Seipel, Tim F.; Alexander, Jake M.; Rew, Lisa J.; Arevalo, Jose R.; Cavieres, Lohengrin A.; McDougall, Keith L.; Milbau, Ann; Naylor, Bridgett J.; Speziale, Karina; Pauchard, Aníbal
Aim We investigated patterns of species richness and community dissimilarity along elevation gradients using globally replicated, standardized surveys of vascular plants. We asked how these patterns of diversity are influenced by anthropogenic pressures (road construction and non‐native species). Location Global. Time period 2008–2015. Major taxa studied Vascular plants. Methods Native and non‐native vascular plant species were recorded in 943 plots along 25 elevation gradients, in nine mountain regions, on four continents. Sampling took place in plots along and away from roads. We analysed the effects of elevation and distance from road on species richness patterns and community dissimilarity (beta‐diversity), and assessed how non‐native species modified such elevational diversity patterns. Results Globally, native and total species richness showed a unimodal relationship with elevation that peaked at lower‐mid elevations, but these patterns were altered along roads and due to non‐native species. Differences in elevational species richness patterns between regions disappeared along roadsides, and non‐native species changed the patterns’ character in all study regions. Community dissimilarity was reduced along roadsides and through non‐native species. We also found a significant elevational decay of beta‐diversity, which however was not affected by roads or non‐native species. Main conclusions Idiosyncratic native species richness patterns in plots away from roads implicate region‐specific mechanisms underlying these patterns. However, along roadsides a clearer elevational signal emerged and species richness mostly peaked at mid‐elevations. We conclude that both roads and non‐native species lead to a homogenization of species richness patterns and plant communities in mountains.
Running off the road: roadside non-native plants invading mountain vegetation
(2018-06) McDougall, Keith L.; Lembrechts, Jonas; Rew, Lisa J.; Haider, Sylvia; Cavieres, Lohengrin A.; Kueffer, Christoph; Milbau, Ann; Naylor, Bridgett J.; Nuñez, Martin A.; Pauchard, Aníbal; Seipel, Tim F.; Speziale, Karina L.; Wright, Genevieve T.; Alexander, Jake M.
Prevention is regarded as a cost-effective management action to avoid unwanted impacts of non-native species. However, targeted prevention can be difficult if little is known about the traits of successfully invading non-native species or habitat characteristics that make native vegetation more resistant to invasion. Here, we surveyed mountain roads in seven regions worldwide, to investigate whether different species traits are beneficial during primary invasion (i.e. spread of non-native species along roadside dispersal corridors) and secondary invasion (i.e. percolation from roadsides into natural adjacent vegetation), and to determine if particular habitat characteristics increase biotic resistance to invasion. We found primary invasion up mountain roads tends to be by longer lived, non-ruderal species without seed dispersal traits. For secondary invasion, we demonstrate that both traits of the non-native species and attributes of the receiving natural vegetation contribute to the extent of invasion. Non-native species that invade natural adjacent vegetation tend to be shade and moisture tolerant. Furthermore, non-native species invasion was greater when the receiving vegetation was similarly rich in native species. Our results show how mountain roads define which non-native species are successful; first by favouring certain traits in mountain roadsides (the key dispersal pathway to the top), and secondly by requiring a different set of traits when species invade the natural adjacent vegetation. While patterns in species traits were observed at a global level, regional abiotic and biotic variables largely generated region-specific levels of response, suggesting that management should be regionally driven.