Browsing by Author "Chamecki, Marcelo"

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Air-Parcel Residence Times Within Forest Canopies
(2017-06) Gerken, Tobias; Chamecki, Marcelo; Fuentes, Jose D.
We present a theoretical model, based on a simple model of turbulent diffusion and first-order chemical kinetics, to determine air-parcel residence times and the out-of-canopy export of reactive gases emitted within forest canopies under neutral conditions. Theoretical predictions of the air-parcel residence time are compared to values derived from large-eddy simulation for a range of canopy architectures and turbulence levels under neutral stratification. Median air-parcel residence times range from a few sec in the upper canopy to approximately 30 min near the ground and the distribution of residence times is skewed towards longer times in the lower canopy. While the predicted probability density functions from the theoretical model and large-eddy simulation are in good agreement with each other, the theoretical model requires only information on canopy height and eddy diffusivities inside the canopy. The eddy-diffusivity model developed additionally requires the friction velocity at canopy top and a parametrized profile of the standard deviation of vertical velocity. The theoretical model of air-parcel residence times is extended to include first-order chemical reactions over a range of of DamkÃ¶hler numbers (Da) characteristic of plant-emitted hydrocarbons. The resulting out-of-canopy export fractions range from near 1 for Da=10âˆ’3Da=10âˆ’3 to less than 0.3 at Da=10Da=10. These results highlight the necessity for dense and tall forests to include the impacts of air-parcel residence times when calculating the out-of-canopy export fraction for reactive trace gases.
Downward transport of ozone rich air & implications for atmospheric chemistry in the Amazon rainforest
(2016-01) Gerken, Tobias; Wei, Dandan; Chase, Randy J.; Fuentes, Jose D.; Schumacher, Courtney; Machado, Luiz A.; Andreoli, Rita V.; Chamecki, Marcelo; Ferreira de Souza, Rodrigo A.; Freire, Livia S.; Jardine, Angela B.; Manzi, Antonio O.; Nascimento dos Santos, Rosa M.; von Randow, Celso; dos Santos Costa, Patricia; Stoy, Paul C.; Tota, Julio; Trowbridge, Amy M.
From April 2014 to January 2015, ozone (O3) dynamics were investigated as part of GoAmazon 2014/5 project in the central Amazon rainforest of Brazil. Just above the forest canopy, maximum hourly O3 mixing ratios averaged 20 ppbv (parts per billion on a volume basis) during the June–September dry months and 15 ppbv during the wet months. Ozone levels occasionally exceeded 75 ppbv in response to influences from biomass burning and regional air pollution. Individual convective storms transported O3-rich air parcels from the mid-troposphere to the surface and abruptly enhanced the regional atmospheric boundary layer by as much as 25 ppbv. In contrast to the individual storms, days with multiple convective systems produced successive, cumulative ground-level O3 increases. The magnitude of O3 enhancements depended on the vertical distribution of O3 within storm downdrafts and origin of downdrafts in the troposphere. Ozone mixing ratios remained enhanced for > 2 h following the passage of storms, which enhanced chemical processing of rainforest-emitted isoprene and monoterpenes. Reactions of isoprene and monoterpenes with O3 are modeled to generate maximum hydroxyl radical formation rates of 6 × 106 radicals cm−3s−1. Therefore, one key conclusion of the present study is that downdrafts of convective storms are estimated to transport enough O3 to the surface to initiate a series of reactions that reduce the lifetimes of rainforest-emitted hydrocarbons.
Environmental and biological controls on seasonal patterns of isoprene above a rain forest in central Amazonia
(2018-06) Wei, Dandan; Fuentes, Jose D.; Gerken, Tobias; Chamecki, Marcelo; Trowbridge, Amy M.; Stoy, Paul C.; Katul, Gabriel G.; Fisch, Gilberto; Acevedo, Otavio; Manzi, Antonio O.; Randow, Celso von; Nascimento dos Santos, Rosa Maria
The Amazon rain forest is a major global isoprene source, but little is known about its seasonal ambient concentration patterns. To investigate the environmental and phenological controls over isoprene seasonality, we measured isoprene mixing ratios, concurrent meteorological data, and leaf area indices from April 2014 to January 2015 above a rain forest in the central Amazon, Brazil. Daytime median isoprene mixing ratios varied throughout the year by a factor of two. The isoprene seasonal pattern was not solely driven by sunlight and temperature. Leaf age and quantity also contributed to the seasonal variations of isoprene concentrations, suggesting leaf phenology was a crucial variable needed to correctly estimate isoprene emissions. A zero-dimensional model incorporating the estimated emissions, atmospheric boundary layer dynamics, and air chemistry was used to assess the contributions of each process on the variability of isoprene. Surface deposition was an important sink mechanism and accounted for 78% of the nighttime loss of isoprene. Also, chemical reactions destroyed isoprene and during 6:00 to 18:00 h local time 56, 77, 69, and 69% of the emitted isoprene was chemically consumed in June, September, December, and January, respectively. Entrainment fluxes from the residual layer contributed 34% to the early-morning above-canopy isoprene mixing ratios. Sensitivity analysis showed that hydroxyl radical (HO) recycling and segregation of isoprene–HO played relatively lesser roles (up to 16%) in regulating ambient isoprene levels. Nitric oxide (NO) levels dominated isoprene chemical reaction pathways associated with consumption and production of HO under low-NO and high volatile organic compound (VOC) conditions. While surface deposition and oxidative processes altered isoprene levels, the relative importance of these factors varied seasonally with leaf phenology playing a more important role.
Linking meteorology, turbulence, and air chemistry in the Amazon Rain Forest
(2016-12) Fuentes, Jose D.; Chamecki, Marcelo; Nascimento dos Santos, Rosa Maria; von Randow, Celso; Stoy, Paul C.; Katul, Gabriel; Fitzjarrald, David; Manzi, Antonio O.; Gerken, Tobias; Trowbridge, Amy M.; Freire, Livia Souza; Ruiz-Plancarte, Jesus; Furtunato Maia, Jair Max; Tota, Julio; Dias, Nelson; Fisch, Gilberto; Schumacher, Courtney; Acevedo, Otavio C.; Mercer, Juliane Rezende; Yanez-Serrano, Ana Maria
We describe the salient features of a field study whose goals are to quantify the vertical distribution of plant-emitted hydrocarbons and their contribution to aerosol and cloud condensation nuclei production above a central Amazonian rain forest. Using observing systems deployed on a 50-m meteorological tower, complemented with tethered balloon deployments, the vertical distribution of hydrocarbons and aerosols was determined under different boundary layer thermodynamic states. The rain forest emits sufficient reactive hydrocarbons, such as isoprene and monoterpenes, to provide precursors of secondary organic aerosols and cloud condensation nuclei. Mesoscale convective systems transport ozone from the middle troposphere, enriching the atmospheric boundary layer as well as the forest canopy and surface layer. Through multiple chemical transformations, the ozone-enriched atmospheric surface layer can oxidize rain forest-emitted hydrocarbons. One conclusion derived from the field studies is that the rain forest produces the necessary chemical species and in sufficient amounts to undergo oxidation and generate aerosols that subsequently activate into cloud condensation nuclei.
Scaling and similarity of the anisotropic coherent eddies in near-surface atmospheric turbulence
(2018-03) Ghannam, Khaled; Bou-Zeid, Elie; Gerken, Tobias; Chamecki, Marcelo
The low-wavenumber regime of the spectrum of turbulence commensurate with Townsend's "attached" eddies is investigated here for the near-neutral atmospheric surface layer (ASL) and the roughness sublayer (RSL) above vegetation canopies. The central thesis corroborates the significance of the imbalance between local production and dissipation of turbulence kinetic energy (TKE) and canopy shear in challenging the classical distance-from-the-wall scaling of canonical turbulent boundary layers. Using five experimental datasets (two vegetation canopy RSL flows, two ASL flows, and one open-channel experiment), this paper explores (i) the existence of a low-wavenumber k-1 scaling law in the (wind) velocity spectra or, equivalently, a logarithmic scaling ln(r) in the velocity structure functions; (ii) phenomenological aspects of these anisotropic scales as a departure from homogeneous and isotropic scales; and (iii) the collapse of experimental data when plotted with different similarity coordinates. The results show that the extent of the k-1 and/or ln(r) scaling for the longitudinal velocity is shorter in the RSL above canopies than in the ASL because of smaller scale separation in the former. Conversely, these scaling laws are absent in the vertical velocity spectra except at large distances from the wall. The analysis reveals that the statistics of the velocity differences Δu and Δw approach a Gaussian-like behavior at large scales and that these eddies are responsible for momentum/energy production corroborated by large positive (negative) excursions in Δu accompanied by negative (positive) ones in Δw. A length scale based on TKE dissipation collapses the velocity structure functions at different heights better than the inertial length scale.
Temporal Scales of the Nocturnal Flow Within and Above a Forest Canopy in Amazonia
(2016-10) Santos, Daniel M.; Acevedo, Otavio C.; Chamecki, Marcelo; Fuentes, Jose D.; Gerken, Tobias; Stoy, Paul C.
Multiresolution decomposition is applied to 10 months of nocturnal turbulence observations taken at eight levels within and above a forest canopy in Central Amazonia. The aim is to identify the contributions of different temporal scales of the flow above and within the canopy. Results show that turbulence intensity in the lower canopy is mostly affected by the static stability in the upper canopy. Horizontal velocity fluctuations peak at time scales longer than 100 s within the canopy, which correspond to the scale of non-turbulent submeso motions above the canopy. In the vertical velocity spectrum near the surface, the peak occurs at time scales around 100 s, which are larger than the time scales of the turbulent flow above the canopy. Heat-flux cospectra within the canopy peak at the same temporal scales as the vertical velocity fluctuations at that level, suggesting the existence of buoyancy driven turbulence. Case studies are presented as evidence that low-frequency fluctuations propagate towards the canopy interior more easily than does turbulence.