Browsing by Author "Fuentes, Jose D."

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Air-Parcel Residence Times Within Forest Canopies
(2017-06) Gerken, Tobias; Chamecki, Marcelo; Fuentes, Jose D.
We present a theoretical model, based on a simple model of turbulent diffusion and first-order chemical kinetics, to determine air-parcel residence times and the out-of-canopy export of reactive gases emitted within forest canopies under neutral conditions. Theoretical predictions of the air-parcel residence time are compared to values derived from large-eddy simulation for a range of canopy architectures and turbulence levels under neutral stratification. Median air-parcel residence times range from a few sec in the upper canopy to approximately 30 min near the ground and the distribution of residence times is skewed towards longer times in the lower canopy. While the predicted probability density functions from the theoretical model and large-eddy simulation are in good agreement with each other, the theoretical model requires only information on canopy height and eddy diffusivities inside the canopy. The eddy-diffusivity model developed additionally requires the friction velocity at canopy top and a parametrized profile of the standard deviation of vertical velocity. The theoretical model of air-parcel residence times is extended to include first-order chemical reactions over a range of of DamkÃ¶hler numbers (Da) characteristic of plant-emitted hydrocarbons. The resulting out-of-canopy export fractions range from near 1 for Da=10âˆ’3Da=10âˆ’3 to less than 0.3 at Da=10Da=10. These results highlight the necessity for dense and tall forests to include the impacts of air-parcel residence times when calculating the out-of-canopy export fraction for reactive trace gases.
Downward transport of ozone rich air & implications for atmospheric chemistry in the Amazon rainforest
(2016-01) Gerken, Tobias; Wei, Dandan; Chase, Randy J.; Fuentes, Jose D.; Schumacher, Courtney; Machado, Luiz A.; Andreoli, Rita V.; Chamecki, Marcelo; Ferreira de Souza, Rodrigo A.; Freire, Livia S.; Jardine, Angela B.; Manzi, Antonio O.; Nascimento dos Santos, Rosa M.; von Randow, Celso; dos Santos Costa, Patricia; Stoy, Paul C.; Tota, Julio; Trowbridge, Amy M.
From April 2014 to January 2015, ozone (O3) dynamics were investigated as part of GoAmazon 2014/5 project in the central Amazon rainforest of Brazil. Just above the forest canopy, maximum hourly O3 mixing ratios averaged 20 ppbv (parts per billion on a volume basis) during the June–September dry months and 15 ppbv during the wet months. Ozone levels occasionally exceeded 75 ppbv in response to influences from biomass burning and regional air pollution. Individual convective storms transported O3-rich air parcels from the mid-troposphere to the surface and abruptly enhanced the regional atmospheric boundary layer by as much as 25 ppbv. In contrast to the individual storms, days with multiple convective systems produced successive, cumulative ground-level O3 increases. The magnitude of O3 enhancements depended on the vertical distribution of O3 within storm downdrafts and origin of downdrafts in the troposphere. Ozone mixing ratios remained enhanced for > 2 h following the passage of storms, which enhanced chemical processing of rainforest-emitted isoprene and monoterpenes. Reactions of isoprene and monoterpenes with O3 are modeled to generate maximum hydroxyl radical formation rates of 6 × 106 radicals cm−3s−1. Therefore, one key conclusion of the present study is that downdrafts of convective storms are estimated to transport enough O3 to the surface to initiate a series of reactions that reduce the lifetimes of rainforest-emitted hydrocarbons.
Environmental and biological controls on seasonal patterns of isoprene above a rain forest in central Amazonia
(2018-06) Wei, Dandan; Fuentes, Jose D.; Gerken, Tobias; Chamecki, Marcelo; Trowbridge, Amy M.; Stoy, Paul C.; Katul, Gabriel G.; Fisch, Gilberto; Acevedo, Otavio; Manzi, Antonio O.; Randow, Celso von; Nascimento dos Santos, Rosa Maria
The Amazon rain forest is a major global isoprene source, but little is known about its seasonal ambient concentration patterns. To investigate the environmental and phenological controls over isoprene seasonality, we measured isoprene mixing ratios, concurrent meteorological data, and leaf area indices from April 2014 to January 2015 above a rain forest in the central Amazon, Brazil. Daytime median isoprene mixing ratios varied throughout the year by a factor of two. The isoprene seasonal pattern was not solely driven by sunlight and temperature. Leaf age and quantity also contributed to the seasonal variations of isoprene concentrations, suggesting leaf phenology was a crucial variable needed to correctly estimate isoprene emissions. A zero-dimensional model incorporating the estimated emissions, atmospheric boundary layer dynamics, and air chemistry was used to assess the contributions of each process on the variability of isoprene. Surface deposition was an important sink mechanism and accounted for 78% of the nighttime loss of isoprene. Also, chemical reactions destroyed isoprene and during 6:00 to 18:00 h local time 56, 77, 69, and 69% of the emitted isoprene was chemically consumed in June, September, December, and January, respectively. Entrainment fluxes from the residual layer contributed 34% to the early-morning above-canopy isoprene mixing ratios. Sensitivity analysis showed that hydroxyl radical (HO) recycling and segregation of isoprene–HO played relatively lesser roles (up to 16%) in regulating ambient isoprene levels. Nitric oxide (NO) levels dominated isoprene chemical reaction pathways associated with consumption and production of HO under low-NO and high volatile organic compound (VOC) conditions. While surface deposition and oxidative processes altered isoprene levels, the relative importance of these factors varied seasonally with leaf phenology playing a more important role.
Investigating the mechanisms responsible for the lack of surface energy balance closure in a central Amazonian tropical rainforest
(2017-04) Gerken, Tobias; Ruddell, Benjamin L.; Fuentes, Jose D.; Araújo, Alessandro; Brunsell, Nathaniel A.; Maia, Jair; Manzi, Antonio O.; Mercer, Juliane R.; dos Santos, Rosa Nascinmento; von Randow, Celso; Stoy, Paul C.
This work investigates the diurnal and seasonal behavior of the energy balance residual (E) that results from the observed difference between available energy and the turbulent fluxes of sensible heat (H) and latent heat (LE) at the FLUXNET BR-Ma2 site located in the Brazilian central Amazon rainforest. The behavior of E is analyzed by extending the eddy covariance averaging length from 30 min to 4 h and by applying an Information Flow Dynamical Process Network to diagnose processes and conditions affecting E across different seasons. Results show that the seasonal turbulent flux dynamics and the Bowen ratio are primarily driven by net radiation (Rn), with substantial sub-seasonal variability. The Bowen ratio increased from 0.25 in April to 0.4 at the end of September. Extension of the averaging length from 0.5 (94.6% closure) to 4 h and thus inclusion of longer timescale eddies and mesoscale processes closes the energy balance and lead to an increase in the Bowen ratio, thus highlighting the importance of additional H to E. Information flow analysis reveals that the components of the energy balance explain between 25 and 40% of the total Shannon entropy with higher values during the wet season than the dry season. Dry season information flow from the buoyancy flux to E are 30-50% larger than that from H, indicating the potential importance of buoyancy fluxes to closing E. While the low closure highlights additional sources not captured in the flux data and random measurement errors contributing to E, the findings of the information flow and averaging length analysis are consistent with the impact of mesoscale circulations, which tend to transport more H than LE, on the lack of closure.
Linking meteorology, turbulence, and air chemistry in the Amazon Rain Forest
(2016-12) Fuentes, Jose D.; Chamecki, Marcelo; Nascimento dos Santos, Rosa Maria; von Randow, Celso; Stoy, Paul C.; Katul, Gabriel; Fitzjarrald, David; Manzi, Antonio O.; Gerken, Tobias; Trowbridge, Amy M.; Freire, Livia Souza; Ruiz-Plancarte, Jesus; Furtunato Maia, Jair Max; Tota, Julio; Dias, Nelson; Fisch, Gilberto; Schumacher, Courtney; Acevedo, Otavio C.; Mercer, Juliane Rezende; Yanez-Serrano, Ana Maria
We describe the salient features of a field study whose goals are to quantify the vertical distribution of plant-emitted hydrocarbons and their contribution to aerosol and cloud condensation nuclei production above a central Amazonian rain forest. Using observing systems deployed on a 50-m meteorological tower, complemented with tethered balloon deployments, the vertical distribution of hydrocarbons and aerosols was determined under different boundary layer thermodynamic states. The rain forest emits sufficient reactive hydrocarbons, such as isoprene and monoterpenes, to provide precursors of secondary organic aerosols and cloud condensation nuclei. Mesoscale convective systems transport ozone from the middle troposphere, enriching the atmospheric boundary layer as well as the forest canopy and surface layer. Through multiple chemical transformations, the ozone-enriched atmospheric surface layer can oxidize rain forest-emitted hydrocarbons. One conclusion derived from the field studies is that the rain forest produces the necessary chemical species and in sufficient amounts to undergo oxidation and generate aerosols that subsequently activate into cloud condensation nuclei.
The surface-atmosphere exchange of carbon dioxide in tropical rainforests: Sensitivity to environmental drivers and flux measurement methodology
(2018-12) Fu, Zheng; Gerken, Tobias; Bromley, Gabriel T.; Araújo, Alessandro; Bonal, Damien; Burban, Benoit; Ficklin, Darren L.; Fuentes, Jose D.; Goulden, Michael L.; Hirano, Takashi; Kosugi, Yoshiko; Liddell, Michael; Nicolini, Giacomo; Niu, Shuli; Roupsard, Olivier; Stefani, Paolo; Mi, Chunrong; Tofte, Zaddy; Xiao, Jingfeng; Valentini, Riccardo; Wolf, Sebastian; Stoy, Paul C.
Tropical rainforests play a central role in the Earth system by regulating climate, maintaining biodiversity, and sequestering carbon. They are under threat by direct anthropogenic impacts like deforestation and the indirect anthropogenic impacts of climate change. A synthesis of the factors that determine the net ecosystem exchange of carbon dioxide (NEE) at the site scale across different forests in the tropical rainforest biome has not been undertaken to date. Here, we study NEE and its components, gross ecosystem productivity (GEP) and ecosystem respiration (RE), across thirteen natural and managed forests within the tropical rainforest biome with 63 total site-years of eddy covariance data. Our results reveal that the five ecosystems with the largest annual gross carbon uptake by photosynthesis (i.e. GEP > 3000 g C m(-2) y(-1)) have the lowest net carbon uptake - or even carbon losses versus other study ecosystems because RE is of a similar magnitude. Sites that provided sub canopy CO2 storage observations had higher average magnitudes of GEP and RE and lower average magnitudes of NEE, highlighting the importance of measurement methodology for understanding carbon dynamics in ecosystems with characteristically tall and dense vegetation. A path analysis revealed that vapor pressure deficit (VPD) played a greater role than soil moisture or air temperature in constraining GEP under light saturated conditions across most study sites, but to differing degrees from -0.31 to -0.87 mu mol CO2 m(-2) s(-1) hPa(-1). Climate projections from 13 general circulation models (CMIP5) under the representative concentration pathway that generates 8.5 W m(-2) of radiative forcing suggest that many current tropical rainforest sites on the lower end of the current temperature range are likely to reach a climate space similar to present-day warmer sites by the year 2050, warmer sites will reach a climate not currently experienced, and all forests are likely to experience higher VPD. Results demonstrate the need to quantify if and how mature tropical trees acclimate to heat and water stress, and to further develop flux-partitioning and gap-filling algorithms for defensible estimates of carbon exchange in tropical rainforests.
Temporal Scales of the Nocturnal Flow Within and Above a Forest Canopy in Amazonia
(2016-10) Santos, Daniel M.; Acevedo, Otavio C.; Chamecki, Marcelo; Fuentes, Jose D.; Gerken, Tobias; Stoy, Paul C.
Multiresolution decomposition is applied to 10 months of nocturnal turbulence observations taken at eight levels within and above a forest canopy in Central Amazonia. The aim is to identify the contributions of different temporal scales of the flow above and within the canopy. Results show that turbulence intensity in the lower canopy is mostly affected by the static stability in the upper canopy. Horizontal velocity fluctuations peak at time scales longer than 100 s within the canopy, which correspond to the scale of non-turbulent submeso motions above the canopy. In the vertical velocity spectrum near the surface, the peak occurs at time scales around 100 s, which are larger than the time scales of the turbulent flow above the canopy. Heat-flux cospectra within the canopy peak at the same temporal scales as the vertical velocity fluctuations at that level, suggesting the existence of buoyancy driven turbulence. Case studies are presented as evidence that low-frequency fluctuations propagate towards the canopy interior more easily than does turbulence.