College of Engineering
Permanent URI for this communityhttps://scholarworks.montana.edu/handle/1/27
The College of Engineering at Montana State University will serve the State of Montana and the nation by fostering lifelong learning, integrating learning and discovery, developing and sharing technical expertise, and empowering students to be tomorrow's leaders.
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Item Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia(2018-04) Carlson, Ross P.; Beck, Ashley E.; Phalak, Poonam; Fields, Matthew W.; Gedeon, Tomas; Hanley, Luke; Harcombe, W. R.; Henson, Michael A.; Heys, Jeffrey J.Resource scarcity is a common stress in nature and has a major impact on microbial physiology. This review highlights microbial acclimations to resource scarcity, focusing on resource investment strategies for chemoheterotrophs from the molecular level to the pathway level. Competitive resource allocation strategies often lead to a phenotype known as overflow metabolism; the resulting overflow byproducts can stabilize cooperative interactions in microbial communities and can lead to cross-feeding consortia. These consortia can exhibit emergent properties such as enhanced resource usage and biomass productivity. The literature distilled here draws parallels between in silico and laboratory studies and ties them together with ecological theories to better understand microbial stress responses and mutualistic consortia functioning.Item An experimentally validated immersed boundary model of fluid-biofilm interaction(2010-06) Vo, Garret D.; Brindle, Eric R.; Heys, Jeffrey J.Biofilms are colonies of microorganisms that live on wetted surfaces in a matrix consisting of polysaccharides, proteins, and nucleic acids. According to the National Institute of Health (NIH), biofilms play a role in over 80 percent of microbial infections in the body and these infections are remarkably difficult to treat with antimicrobial compounds. The objective here is to understand and predict the physical interaction between a biofilm and the surrounding fluid flow.We have developed a biofilm-fluid interaction model, based on the Immersed Boundary Method, to simulate the interaction between the biofilm and a moving fluid. The model predictions of biofilm deformation quantitatively agree with experimental measurements for a range a biofilms using a simple immersed elastic solid to model the biofilm matrix. An immersed viscoelastic solid model is also developed and compared with experimental measurements. The results show that the viscoelastic behavior inherent to the immersed boundary method (even when using a simple immersed elastic solid) is sufficient for some biofilms, but a slightly viscoelastic solid gives more general agreement with experimental measurements.Item Biofilm deformation in response to fluid flow in capillaries(2011-04) Vo, Garret D.; Heys, Jeffrey J.Biofilms are complex mixtures of microorganisms and extracellular matrix that exist on many wetted surfaces. Recently, magnetic resonance microscopy has been used to measure fluid velocities near biofilms that are attached to the walls of capillary channels. These velocity measurements showed unexpectedly high secondary velocities (i.e., high velocity magnitudes perpendicular to the direction of bulk flow and perpendicular to the surface that the biofilm is attached), and the presence of high secondary velocities near a biofilm could increase the delivery of substrates to the biofilm. A mathematical model, based on the immersed boundary method, is used here to examine the physical interaction between a biofilm and a moving fluid in a capillary and to analyze possible factors that may contribute to the elevated secondary velocities observed experimentally. The simulation predicts the formation of a recirculation downstream of a biofilm, and this recirculation deforms and lifts the biofilm upward from the surface to which the biofilm is attached. Changing the mechanical properties (i.e., stiffness) of the biofilm impacts both the lifting of the biofilm and the magnitude of the secondary velocities. The maximum lifting of the biofilm occurs when the biofilm properties are similar to previous experimental measurements, which indicates that the mechanical properties of the biofilm may be tuned for the generation of maximum secondary velocity magnitude and transport of substrates to the biofilm.