Scholarly Work - Ecology
Permanent URI for this collectionhttps://scholarworks.montana.edu/handle/1/8716
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Item Evaluating wildlife translocations using genomics: A bighorn sheep case study(Wiley, 2020-12) Flesch, Elizabeth P.; Graves, Tabitha A.; Thomson, Jennifer M.; Proffitt, Kelly M.; Stephenson, Thomas R.; Garrott, Robert A.Wildlife restoration often involves translocation efforts to reintroduce species and supplement small, fragmented populations. We examined the genomic consequences of bighorn sheep (Ovis canadensis) translocations and population isolation to enhance understanding of evolutionary processes that affect population genetics and inform future restoration strategies. We conducted a population genomic analysis of 511 bighorn sheep from 17 areas, including native and reintroduced populations that received 0–10 translocations. Using the Illumina High Density Ovine array, we generated datasets of 6,155 to 33,289 single nucleotide polymorphisms and completed clustering, population tree, and kinship analyses. Our analyses determined that natural gene flow did not occur between most populations, including two pairs of native herds that had past connectivity. We synthesized genomic evidence across analyses to evaluate 24 different translocation events and detected eight successful reintroductions (i.e., lack of signal for recolonization from nearby populations) and five successful augmentations (i.e., reproductive success of translocated individuals) based on genetic similarity with the source populations. A single native population founded six of the reintroduced herds, suggesting that environmental conditions did not need to match for populations to persist following reintroduction. Augmentations consisting of 18–57 animals including males and females succeeded, whereas augmentations of two males did not result in a detectable genetic signature. Our results provide insight on genomic distinctiveness of native and reintroduced herds, information on the relative success of reintroduction and augmentation efforts and their associated attributes, and guidance to enhance genetic contribution of augmentations and reintroductions to aid in bighorn sheep restorationItem Maladaptive nest-site selection by a sagebrush dependent species in a grazing-modified landscape(2019-04) Cutting, Kyle A.; Rotella, Jay J.; Schroff, Sean R.; Frisina, Michael R.; Waxe, James A.; Nunlist, Erika; Sowell, Bok F.Animals are expected to select habitats that maximize their fitness over evolutionary time scales. Yet in human-modified landscapes, habitat selection might not always lead to increased fitness because animals undervalue high-quality resources that appear less attractive than those of lower quality. In the American West, agriculture has modified landscapes, yet little is known about whether agricultural changes alter the reliability of the cues animals use to identify habitat quality; ultimately forming maladaptive breeding strategies where behavioral cues are mismatched with survival outcomes. Using the greater sage-grouse, a species highly dependent upon sagebrush landscapes, we (1) evaluated how females select nesting habitats based on sagebrush type, along with livestock grazing related linear and point features, and other biotic, abiotic characteristics, given hypothesized influences on hiding cover, microclimate and predator travel routes and perches, (2) compared habitat selection information with results for nest survival estimates to evaluate if selection appears to be adaptive or not, and (3) used our results to evaluate the most appropriate strategies for this species in a grazing-modified landscape. Nest-site selection for sagebrush type appears to be maladaptive: in the most-preferred sagebrush type, nest survival rate was one-fourth the rate realized by females nesting in the sagebrush type avoided. Nest survival was four times higher for nests placed away from (>100 m), rather than next to (1 m), the nearest fence, and survival was lower within sites with higher cow pie density (a proxy for previous grazing intensity). Live and dead grasses influenced selection and survival in opposing ways such that dead grass was selected for but resulted in reduced survival while live grass was avoided but resulted in increased survival. Results collectively provide the first empirical evidence that a specific type of sagebrush acts as an ecological trap while another sagebrush type is undervalued. These results also suggest that adding more fences to control livestock grazing systems will likely reduce sage-grouse nest survival.Item Cigarette smoking is associated with an altered vaginal tract metabolomic profile(2018-01) Nelson, Tiffanie M.; Borgogna, Joanna-Lynn C.; Michalek, R. D.; Roberts, David W.; Rath, J. M.; Glover, E. D.; Ravel, Jacques; Shardell, M. D.; Yeoman, Carl J.; Brotman, Rebecca M.Cigarette smoking has been associated with both the diagnosis of bacterial vaginosis (BV) and a vaginal microbiota lacking protective Lactobacillus spp. As the mechanism linking smoking with vaginal microbiota and BV is unclear, we sought to compare the vaginal metabolomes of smokers and non-smokers (17 smokers/19 non-smokers). Metabolomic profiles were determined by gas and liquid chromatography mass spectrometry in a cross-sectional study. Analysis of the 16S rRNA gene populations revealed samples clustered into three community state types (CSTs) ---- CST-I (L. crispatus-dominated), CST-III (L. iners-dominated) or CST-IV (low-Lactobacillus). We identified 607 metabolites, including 12 that differed significantly (q-value < 0.05) between smokers and non-smokers. Nicotine, and the breakdown metabolites cotinine and hydroxycotinine were substantially higher in smokers, as expected. Among women categorized to CST-IV, biogenic amines, including agmatine, cadaverine, putrescine, tryptamine and tyramine were substantially higher in smokers, while dipeptides were lower in smokers. These biogenic amines are known to affect the virulence of infective pathogens and contribute to vaginal malodor. Our data suggest that cigarette smoking is associated with differences in important vaginal metabolites, and women who smoke, and particularly women who are also depauperate for Lactobacillus spp., may have increased susceptibilities to urogenital infections and increased malodor.