Publications by Colleges and Departments (MSU - Bozeman)
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Item Longitudinal analysis of the Five Sisters hot springs in Yellowstone National Park reveals a dynamic thermoalkaline environment(Springer Science and Business Media LLC, 2022-11) Peach, Jesse T.; Mueller, Rebecca C.; Skorupa, Dana J.; Mesle, Margaux M.; Kanta, Sutton; Boltinghouse, Eric; Sharon, Bailey; Copie, Valerie; Bothner, Brian; Peyton, Brent M.Research focused on microbial populations of thermoalkaline springs has been driven in a large part by the lure of discovering functional enzymes with industrial applications in high-pH and high temperature environments. While several studies have focused on understanding the fundamental ecology of these springs, the small molecule profiles of thermoalkaline springs have largely been overlooked. To better understand how geochemistry, small molecule composition, and microbial communities are connected, we conducted a three-year study of the Five Sisters (FS) springs that included high-resolution geochemical measurements, 16S rRNA sequencing of the bacterial and archaeal community, and mass spectrometry-based metabolite and extracellular small molecule characterization. Integration of the four datasets facilitated a comprehensive analysis of the interwoven thermoalkaline spring system. Over the course of the study, the microbial population responded to changing environmental conditions, with archaeal populations decreasing in both relative abundance and diversity compared to bacterial populations. Decreases in the relative abundance of Archaea were associated with environmental changes that included decreased availability of specific nitrogen- and sulfur-containing extracellular small molecules and fluctuations in metabolic pathways associated with nitrogen cycling. This multi-factorial analysis demonstrates that the microbial community composition is more closely correlated with pools of extracellular small molecules than with the geochemistry of the thermal springs. This is a novel finding and suggests that a previously overlooked component of thermal springs may have a significant impact on microbial community composition.Item Responses of American black bears to spring resources(Wiley, 2021-11) Bowersock, Nathaniel R.; Litt, Andrea R.; Merkle, Jerod A.; Gunther, Kerry A.; van Manen, Frank T.In temperate regions of the world, food resources are seasonally limited, which causes some wildlife species to seek out nutrient-rich resources to better meet their caloric needs. Animals that utilize high-quality resources may reap fitness benefits as they prepare for mating, migration, or hibernation. American black bears (Ursus americanus) are omnivores that consume both plant and animal food resources to meet macronutrient needs. Black bears capitalize on high-quality food resources, such as soft mast in summer and hard mast during autumn, but we know less about the importance of resource quality during spring. Therefore, we sought to understand the relationship between the spatiotemporal variation in the availability of food and resource selection of black bears during spring. We also aimed to infer potential changes in foraging tactics, from opportunistic foraging to more active selection. Although black bears are described as opportunistic omnivores, we hypothesized they select areas with high-quality forage when available. We instrumented 7 black bears with GPS collars in 2017 and 2018 and estimated fine-scale resource selection with integrated step-selection functions. We found evidence that black bear movements were influenced by forage quality of vegetative food resources. However, we failed to find evidence that black bears actively alter their movements to take advantage of seasonal neonate elk. Although black bears represent a substantial cause of mortality for neonate elk, we found that black bears likely feed on neonates encountered opportunistically while traveling between patches of high-quality forage. Few studies have shown evidence of an omnivorous species capitalizing on spatiotemporal variation in forage quality, yet our data suggest this may be an important strategy for species with diverse diets, particularly where resources are seasonally limited.Item Rub tree use and selection by American black bears and grizzly bears in northern Yellowstone National Park(Ursus, 2022-06) Bowersock, Nathaniel R.; Okada, Hitomi; Litt, Andrea R.; Gunther, Kerry A.; van Manen, Frank T.Several of the world's bear species exhibit tree-rubbing behavior, which is thought to be a form of scent-marking communication. Many aspects of this behavior remain unexplored, including differences in rub tree selection between sympatric bear species. We compiled rub tree data collected on Yellowstone National Park's Northern Range (USA) and compared rub tree selection of sympatric American black bears (Ursus americanus) and grizzly bears (U. arctos) at local and landscape scales. During 2017 and 2018, we identified 217 rub trees and detected black bears at 117 rub trees and grizzly bears at 18 rub trees, based on genetic analysis of collected hair samples. Rub trees generally were located in areas with gentle slopes and close to existing animal trails. Trees selected by black bears were typically in forested areas, whereas trees selected by grizzly bears were in forested and more open areas. Use of rub trees varied seasonally and between sexes for black bears, but seasonal data were inconclusive for grizzly bears. Black bears showed preferences for certain tree species for rubbing, but we did not find evidence that rub tree selection by grizzly bears differed among tree species. Both bear species selected trees that lacked branches on the lower portions of tree trunks and the maximum rub height was consistent with the body length of the bear species that used the tree. Although the sample size for grizzly bears was small, identifying the species and sex of bears based on genetic analysis enhanced interpretation of rub tree use and selection by bears. Scent-marking by black bears and grizzly bears on similar rub objects in well-traversed areas likely serves to enhance communication within and between the 2 species.Item Metagenomes and Metagenome-Assembled Genomes from Substrate-Amended Hot Spring Sediment Incubations from Yellowstone National Park(American Society for Microbiology, 2022-03) Reichart, Nicholas J.; Bowers, Robert M.; Woyke, Tanja; Hatzenpichler, RolandHere, we report on eight sediment metagenomes obtained from an alkaline hot spring, with their corresponding metagenome-assembled genomes. Samples had been incubated for 48 h with various substrate amendments in conjunction with the amino acid analog l -homopropargylglycine in a study targeted at identifying anabolicly active uncultured thermophilic archaea and bacteria.