College of Agriculture
Permanent URI for this communityhttps://scholarworks.montana.edu/handle/1/4
As the foundation of the land grant mission at Montana State University, the College of Agriculture and the Montana Agricultural Experiment Station provide instruction in traditional and innovative degree programs and conduct research on old and new challenges for Montana’s agricultural community. This integration creates opportunities for students and faculty to excel through hands-on learning, to serve through campus and community engagement, to explore unique solutions to distinct and interesting questions and to connect Montanans with the global community through research discoveries and outreach.
Browse
354 results
Search Results
Item Functional attributes of conifers expanding into temperate semi-arid grasslands modulate carbon and nitrogen fluxes in response to prescribed fire(Springer Science and Business Media LLC, 2024) Gay, Justin D.; Currey, Bryce; Davis, Kimberley T.; Brookshire, E. N. JackFire exclusion is a key factor driving conifer expansion into temperate semi-arid grasslands. However, it remains unclear how reintroducing fire affects the aboveground storage of carbon (C) and nitrogen (N) in the expanding tree species and belowground in soils. To assess the impacts of fire reintroduction C and N pools and fluxes in areas of conifer expansion we targeted a region of the Northern Great Plains that has experienced extensive woody plant expansion (WPE) of two species: ponderosa pine (Pinus ponderosa) and juniper (Juniperus spp). We quantified tree mortality of both species to estimate the amount of dead biomass C and N produced by a recent prescribed fire, in addition to changes in soil C, pyrogenic C (PyC), and N concentrations across a woody-cover gradient using a before/after/control experimental design. Post-fire soil chemical analysis revealed a 2 year increase in mineral soil C, PyC and N, suggesting the return of fire led to the transfer of partially combusted plant organic matter back to the soil. Further, we found that functional trait differences between the two species influenced the distribution of living conifer biomass-N prior to fire. Despite junipers having 41% less total aboveground biomass than ponderosa, they contained two times more aboveground N. Prescribed fire resulted in 88% mortality of all mature juniper stems and increased fire severity correlated with greater pre-fire juniper cover. Ponderosa mortality varied by size class, with > 40 cm stem diameter class having only 28% mortality. High mortality and greater aboveground N storage in juniper biomass, compared to ponderosa, led to 77% of the total conifer biomass N lost. Consequently, the functional attributes of expanding trees differentially contribute to fluxes of C and N after the return of fire, with junipers acting as conduits for N movement due to their relatively higher N content in less fire-resistant tissues and ponderosa serving as important and more stable storage pools for C. Together, these findings highlight the importance of considering species-specific traits when planning WPE management strrategies at landscape-scales, particularly when goals include C storage or soil nutrient status.Item Optimizing crop seeding rates on organic grain farms using on farm precision experimentation(Elsevier BV, 2024-09) Loewen, Sasha; Maxwell, Bruce D.Organic agriculture is often regarded as less damaging to the environment than conventional agriculture, though at the expense of lower yields. Field-specific precision agriculture may benefit organic production practices given the inherent need of organic farmers to understand spatiotemporal variation on large-scale fields. Here the primary research question is whether on-farm precision experimentation (OFPE) can be used as an adaptive management methodology to efficiently maximize farmer net returns using variable cover crop and cash crop seeding rates. Inputs of cash crop seed and previous-year green manure cover crop seed were experimentally varied on five different farms across the Northern Great Plains from 2019 to 2022. Experiments provided data to model the crop yield response, and subsequently net return, in response to input (seeding) rates plus a suite of other spatially explicit data from satellite sources. New, field-specific spatially explicit optimum input rates were generated to maximize net return including temporal variation in economic variables. Inputs were spatially optimized and using simulations it was found that the optimization strategies consistently out-performed other strategies by reducing inputs and increasing yields, particularly for non-tillering crops. By adopting site specific management, the average increase in net return for all fields was $50 ha−1. These results showed that precision agriculture technologies and remote sensing can be utilized to provide organic farmers powerful adaptive management tools with a focus on within-field spatial variability in response to primary input drivers of economic return. Continued OFPE for seeding rate optimization will allow quantification of temporal variability and subsequent probabilistic recommendations.Item Alternative sources of molybdenum for Methanococcus maripaludis and their implication for the evolution of molybdoenzymes(Springer Science and Business Media LLC, 2024-10) Payne, Devon; Keller, Lisa M.; Larson, James; Bothner, Brian; Colman, Daniel; Boyd, Eric S.Molybdoenzymes are essential in global nitrogen, carbon, and sulfur cycling. To date, the only known bioavailable source of molybdenum (Mo) is molybdate. However, in the sulfidic and anoxic (euxinic) habitats that predominate in modern subsurface environments and that were pervasive prior to Earth’s widespread oxygenation, Mo occurs as soluble tetrathiomolybdate ion and molybdenite mineral that is not known to be bioavailable. This presents a paradox for how organisms obtain Mo to support molybdoenzymes in these environments. Here, we show that tetrathiomolybdate and molybdenite sustain the high Mo demand of a model anaerobic methanogen, Methanococcus maripaludis, grown via Mo-dependent formate dehydrogenase, formylmethanofuran dehydrogenase, and nitrogenase. Cells grown with tetrathiomolybdate and molybdenite have similar growth kinetics, Mo content, and transcript levels of proteins involved in Mo transport and cofactor biosynthesis when compared to those grown with molybdate, implying similar mechanisms of transport and cofactor biosynthesis. These results help to reconcile the paradox of how Mo is acquired in modern and ancient anaerobes and provide new insight into how molybdoenzymes could have evolved prior to Earth’s oxygenation.Item Short Communication: artificially reared ewes cannot be distinguished from natural reared ewes based on observed maternal behavior or lamb weaning weights(Oxford University Press, 2024-09) Posbergh, Christian J.; Miles, Asha M.; Pettifor, Natasha L.; Thonney, Michael L.Artificially rearing lambs is an important component of United States sheep production as some flocks select for increasing litter size to boost productivity. However, there is a conception among shepherds that artificially reared ewe lambs will ultimately result in poor mothers since they were not naturally raised. The objective of this study was to determine if differences in maternal behavior could be detected between ewes raised artificially and those raised naturally and if dam rearing type had an impact on lamb growth performance. Forty-eight ewes were enrolled comprised of 4 equal sized groups: artificially reared primiparous, naturally reared primiparous, artificially reared multi-parous, and naturally reared multi-parous. Ewes were observed using remote cameras to record maternal behaviors toward the lambs during and shortly after parturition. Behavior of 29 ewes during the first hour after parturition was analyzed. Independent multivariable regression models were evaluated for: proportion of time spent grooming, proportion of time spent helping the lambs nurse, number of helpful bouts, and the number of negative bouts. No statistically significant difference (P < 0.05) was detected between artificially reared and naturally reared ewes for the proportion of time spent grooming and the proportion of time spent helping the lambs nurse. Historical flock data were utilized to evaluate lamb growth between artificially and naturally reared ewes. No detrimental associations between artificially reared ewes and lamb weaning weights were observed. This study shows that artificially reared ewes are no different in terms of mothering behaviors and may be used as potential replacement candidates.Item Multitemporal Hyperspectral Characterization of Wheat Infested by Wheat Stem Sawfly, Cephus cinctus Norton(MDPI AG, 2024-09) Ermatinger, Lochlin S.; Powell, Scott L.; Peterson, Robert K.D.; Weaver, David K.Wheat (Triticum aestivum L.) production in the Northern Great Plains of North America has been challenged by wheat stem sawfly (WSS), Cephus cinctus Norton, for a century. Damaging WSS populations have increased, highlighting the need for reliable surveys. Remote sensing (RS) can be used to correlate reflectance measurements with nuanced phenomena like cryptic insect infestations within plants, yet little has been done with WSS. To evaluate interactions between WSS-infested wheat and spectral reflectance, we grew wheat plants in a controlled environment, experimentally infested them with WSS and recorded weekly hyperspectral measurements (350–2500 nm) of the canopies from prior to the introduction of WSS to full senescence. To assess the relationships between WSS infestation and wheat reflectance, we employed sparse multiway partial least squares regression (N-PLS), which models multidimensional covariance structures inherent in multitemporal hyperspectral datasets. Multitemporal hyperspectral measurements of wheat canopies modeled with sparse N-PLS accurately estimated the proportion of WSS-infested stems (R2 = 0.683, RMSE = 13.5%). The shortwave-infrared (1289–1380 nm) and near-infrared (942–979 nm) spectral regions were the most important in estimating infestation, likely due to internal feeding that decreases plant-water content. Measurements from all time points were important, suggesting aerial RS of WSS in the field should incorporate the visible through shortwave spectra collected from the beginning of WSS emergence at least weekly until the crop reaches senescence.Item Unresolved questions regarding cellular cysteine sources and their possible relationships to ferroptosis(Europe PMC, 2024-05) Arnér, Elias S.J.; Schmidt, Edward E.Cysteine is required for synthesis of glutathione (GSH), coenzyme A, other sulfur-containing metabolites, and most proteins. In most cells, cysteine comes from extracellular disulfide sources including cystine, glutathione-disulfide, and peptides. The thioredoxin reductase-1 (TrxR1)- or glutathione-disulfide reductase (GSR)-driven enzymatic systems can fuel cystine reduction via thioredoxins, glutaredoxins, or other thioredoxin-fold proteins. Free cystine enters cells thorough the cystine-glutamate antiporter, xCT, but systemically, plasma glutathione-disulfide might predominate as a cystine source. Erastin, inhibiting both xCT and voltage-dependent anion channels, induces ferroptotic cell death, so named because this type of cell death is antagonized by iron-chelators. Many cancer cells seem to be predisposed to ferroptosis, which has been proposed as a targetable cancer liability. Ferroptosis is associated with lipid peroxidation and loss of either glutathione peroxidase-4 (GPX4) or ferroptosis suppressor protein-1 (FSP1), which each prevent accumulation of lipid peroxides. It has been suggested that an xCT inhibition-induced cellular cysteine-deficiency lowers GSH levels, starving GPX4 for reducing power and allowing membrane lipid peroxides to accumulate, thereby causing ferroptosis. Aspects of ferroptosis are however not fully understood and need to be further scrutinized, for example that neither disruption of GSH synthesis, loss of GSH, nor disruption of glutathione disulfide reductase (GSR), triggers ferroptosis in animal models. Here we reevaluate the relationships between Erastin, xCT, GPX4, cellular cysteine and GSH, RSL3 or ML162, and ferroptosis. We conclude that, whereas both Cys and ferroptosis are potential liabilities in cancer, their relationship to each other remains insufficiently understood.Item Microbial assemblages and associated biogeochemical processes in Lake Bonney, a permanently ice-covered lake in the McMurdo Dry Valleys, Antarctica(Springer Science and Business Media LLC, 2024-08) Lee, Hanbyul; Hwang, Kyuin; Cho, Ahnna; Kim, Soyeon; Kim, Minkyung; Morgan-Kiss, Rachael; Priscu, John C.; Mo Kim, Kyung; Kim, Ok-SunBackground. Lake Bonney, which is divided into a west lobe (WLB) and an east lobe (ELB), is a perennially ice-covered lake located in the McMurdo Dry Valleys of Antarctica. Despite previous reports on the microbial community dynamics of ice-covered lakes in this region, there is a paucity of information on the relationship between microbial genomic diversity and associated nutrient cycling. Here, we applied gene- and genome-centric approaches to investigate the microbial ecology and reconstruct microbial metabolic potential along the depth gradient in Lake Bonney. Results. Lake Bonney is strongly chemically stratified with three distinct redox zones, yielding different microbial niches. Our genome enabled approach revealed that in the sunlit and relatively freshwater epilimnion, oxygenic photosynthetic production by the cyanobacterium Pseudanabaena and a diversity of protists and microalgae may provide new organic carbon to the environment. CO-oxidizing bacteria, such as Acidimicrobiales, Nanopelagicales, and Burkholderiaceae were also prominent in the epilimnion and their ability to oxidize carbon monoxide to carbon dioxide may serve as a supplementary energy conservation strategy. In the more saline metalimnion of ELB, an accumulation of inorganic nitrogen and phosphorus supports photosynthesis despite relatively low light levels. Conversely, in WLB the release of organic rich subglacial discharge from Taylor Glacier into WLB would be implicated in the possible high abundance of heterotrophs supported by increased potential for glycolysis, beta-oxidation, and glycoside hydrolase and may contribute to the growth of iron reducers in the dark and extremely saline hypolimnion of WLB. The suboxic and subzero temperature zones beneath the metalimnia in both lobes supported microorganisms capable of utilizing reduced nitrogens and sulfurs as electron donors. Heterotrophs, including nitrate reducing sulfur oxidizing bacteria, such as Acidimicrobiales (MAG72) and Salinisphaeraceae (MAG109), and denitrifying bacteria, such as Gracilimonas (MAG7), Acidimicrobiales (MAG72) and Salinisphaeraceae (MAG109), dominated the hypolimnion of WLB, whereas the environmental harshness of the hypolimnion of ELB was supported by the relatively low in metabolic potential, as well as the abundance of halophile Halomonas and endospore-forming Virgibacillus. Conclusions. The vertical distribution of microbially driven C, N and S cycling genes/pathways in Lake Bonney reveals the importance of geochemical gradients to microbial diversity and biogeochemical cycles with the vertical water column.Item The Use of Pulmonary Arterial Pressure (PAP) for Improved Beef Cattle Management(MDPI AG, 2024-08) Stearns, Kaylen; DelCurto-Wyffels, Hannah; Wyffels, Sam; Van Emon, Megan; DelCurto, TimPulmonary arterial pressure (PAP) determines cattle’s susceptibility to High Altitude Disease (HAD), also known as Brisket Disease, High Mountain Disease, and right-sided heart failure (RHF). This non-infectious disease causes pulmonary hypertension due to hypoxia. PAP measures the resistance of blood flow through the lungs. It is estimated that 1.5 million head of cattle are raised in high-altitude environments (above 1500 m), and HAD accounts for 3–5% of calf death loss yearly. In addition, there have been increasing concerns about feedlot cattle succumbing to RHF at moderate elevations. This review focuses on the historical background, explanation of PAP measurement and scores, genetic implications, and the relationship between PAP and economically relevant traits. Specifically, traits such as gestation length, birth weight, weaning weight, and yearling weight may impact PAP scores. In addition, environmental effects and other factors impacting PAP score variations are discussed. Information gaps and research needs are addressed to determine where missing information could improve the understanding of PAP while also benefiting beef cattle producers in high-elevation production systems.Item Acquisition of elemental sulfur by sulfur-oxidising Sulfolobales(Wiley, 2024-08) Fernandes-Martins, Maria C.; Springer, Carli; Colman, Daniel R.; Boyd, Eric S.Elemental sulfur (S80)-oxidising Sulfolobales (Archaea) dominate high-temperature acidic hot springs (>80°C, pH <4). However, genomic analyses of S80-oxidising members of the Sulfolobales reveal a patchy distribution of genes encoding sulfur oxygenase reductase (SOR), an S80 disproportionating enzyme attributed to S80 oxidation. Here, we report the S80-dependent growth of two Sulfolobales strains previously isolated from acidic hot springs in Yellowstone National Park, one of which associated with bulk S80 during growth and one that did not. The genomes of each strain encoded different sulfur metabolism enzymes, with only one encoding SOR. Dialysis membrane experiments showed that direct contact is not required for S80 oxidation in the SOR-encoding strain. This is attributed to the generation of hydrogen sulfide (H2S) from S80 disproportionation that can diffuse out of the cell to solubilise bulk S80 to form soluble polysulfides (Sx2−) and/or S80 nanoparticles that readily diffuse across dialysis membranes. The Sulfolobales strain lacking SOR required direct contact to oxidise S80, which could be overcome by the addition of H2S. High concentrations of S80 inhibited the growth of both strains. These results implicate alternative strategies to acquire and metabolise sulfur in Sulfolobales and have implications for their distribution and ecology in their hot spring habitats.Item Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution(Springer Science and Business Media LLC, 2024-08) Colman, Daniel R.; Keller, Lisa M.; Arteaga-Pozo, Emilia; Andrade-Barahona, Eva; St. Clair, Brian; Shoemaker, Anna; Cox, Alysia; Boyd, Eric S.The geosphere and the microbial biosphere have co-evolved for ~3.8 Ga, with many lines of evidence suggesting a hydrothermal habitat for life’s origin. However, the extent that contemporary thermophiles and their hydrothermal habitats reflect those that likely existed on early Earth remains unknown. To address this knowledge gap, 64 geochemical analytes were measured and 1022 metagenome-assembled-genomes (MAGs) were generated from 34 chemosynthetic high-temperature springs in Yellowstone National Park and analysed alongside 444 MAGs from 35 published metagenomes. We used these data to evaluate co-variation in MAG taxonomy, metabolism, and phylogeny as a function of hot spring geochemistry. We found that cohorts of MAGs and their functions are discretely distributed across pH gradients that reflect different geochemical provinces. Acidic or circumneutral/alkaline springs harbor MAGs that branched later and are enriched in sulfur- and arsenic-based O2-dependent metabolic pathways that are inconsistent with early Earth conditions. In contrast, moderately acidic springs sourced by volcanic gas harbor earlier-branching MAGs that are enriched in anaerobic, gas-dependent metabolisms (e.g. H2, CO2, CH4 metabolism) that have been hypothesized to support early microbial life. Our results provide insight into the influence of redox state in the eco-evolutionary feedbacks between thermophiles and their habitats and suggest moderately acidic springs as early Earth analogs.